Detailed information on CNT30362957


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N4|40G3_ORYSJ, E-value = 4e-67

BLAST vs NONCODE:
NONZMAT000139, E-value = 3e-15

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672247Sorghum bicolorSetaria viridis16.927.9794.78134forward
CNT30287058Sorghum bicolorTriticum aestivum25.7358.6288.73204forward
CNT30221016Sorghum bicolorHordeum vulgare18.0324.9692.31143forward
CNT30386449Sorghum bicolorTriticum turgidum15.1324.2991.67120forward
CNT30658727Sorghum bicolorTriticum dicoccoides36.9542.3489.42293forward
CNT30680806Sorghum bicolorTriticum urartu25.7358.7988.73204forward
CNT30340854Sorghum bicolorEragrostis tef15.5153.9595.93123forward
CNT30556764Sorghum bicolorPanicum hallii38.463994.43305forward

Expression of CNT30362957

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MIIDRSHHRSVGSVVGLDLPALVVALAPLPEHDVGAVADTAVPLVAVEGIEVECLMASPVALFTSANAG*

>peptide 2 (33 aa)
MFTCDIPYGTGGAYPGVAMPPPYRWSRPLYAMTP

>peptide 3 (33 aa)
MLVLHLMSLIQCWYSSLGFAGASTTLPSRMVMA*

>peptide 4 (58 aa)
MLTDMRAERRADGIGDDRGSVILLVRIHAYIYRYIYIGHTYMHVVSMHDDRIDRRDDG*

>peptide 5 (35 aa)
CRSTSIISMCCIATYCCKVHIHDHEYPSSRSCCFI*

Sequence

>CNT30362957
TGTAGGAGTACTTCCATAATAAGTATGTGTTGTATCGCTACTTATTGTTGCAAGGTACATATACATGACCATGAGTACCCCTCATCTCGCTCCTGCTGCT
TTATCTAATATGCACACATGCTGACAGACATGCGTGCAGAAAGACGAGCAGACGGCATAGGAGATGATCGAGGCTCAGTTATTCTGCTAGTGCGTATACA
TGCGTACATATATAGATACATATACATAGGCCATACGTACATGCACGTCGTCTCCATGCATGACGACAGGATCGATCGACGCGACGATGGATGATCATCG
ATAGATCTCATCATCGATCAGTTGGTTCAGTAGTAGGGCTGGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGATGTCGGTGCCGT
CGCGGACACCGCCGTGCCACTTGTCGCCGTGGAGGGCATCGAAGTTGAGTGCTTGATGGCCTCCCCGGTCGCCTTGTTCACCAGCGCGAACGCCGGGTAA
CCTTCCTCGTCCTTGATGCTCGTGCTCCACCTCATGTCCTTGATCCAGTGCTGGTACTCGTCCTTGGGGTTCGCCGGCGCCAGCACCACCCTGCCGTCGC
GGATGGTCATGGCGTAGTTGGGGTTGGCGCGGCAGTACACCTTCACGGTCGGCTGCGGCGGCAGCGGCCGACCGCACCCGTTGCCCTCGATGTTCACCTG
CGACATCCCGTACGGCACCGGCGGTGCGTACCCCGGCGTAGCGATGCCGCCGCCGTACCGCTGGTCACGGCCGTTGTATGCCATGACGCCGAC