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Detailed information on CNT30362823


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30450081Sorghum bicolorSaccharum spontaneum94.0321.1393.24488forward
CNT3013315Sorghum bicolorZea mays14.8422.7894.8177forward
CNT30580794Sorghum bicolorEchinochloa crusgalli55.6817.284.78289forward
CNT30496207Sorghum bicolorDigitaria exilis54.3412.6883.69282forward

Expression of CNT30362823

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MSKIPFCATAVNLNPLLQPAVVVAVGRSQEGKNNVGRWRGAGPGRRRCR

Sequence

>CNT30362823
TCCGGGACACAGCTAAGCTGATTTTACAACATACGGAGTACCACTACTTAACTTAATAACATCACATCACACCGTGCTGTTCTTACAACCTGTAGAGCAG
CACCATCTTCTAGCGAGAAACAGCTACCAGAACAATGGACACCTGAACAGCCGGGGTCACTGACCAGTGACCGACCGACCACCGGAGACGCCGGACACAA
AAACGCCGGCTTCCCGTCGGTTGTGGTTCTCTCCTCCGGGAACCAAACCCTAAATAACATAAGAGATCTACAACCTGACTTGACCAGTGACAGCAACAAA
AACGAATTGAACATCTACACAAAACGAACGAACGGGATTAGCACTAATAATCCACTAGTGCCCGCGCAGGATGTCTAAAATACCATTCTGCGCGACGGCC
GTTAACCTTAACCCTCTGCTGCAGCCTGCAGTAGTAGTAGCAGTCGGAAGGAGCCAAGAAGGAAAGAACAATGTCGGTCGGTGGCGTGGAGCGGGCCCCG
GGAGGCGGCGTTGTCGGGG