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Detailed information on CNT30362790


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 2e-100

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186748Sorghum bicolorSecale cereale51.7255.1691.4465forward
CNT30298565Sorghum bicolorTriticum aestivum52.3954.4593.42471forward
CNT30252168Sorghum bicolorAvena sativa60.6265.9889.36545forward
CNT30664228Sorghum bicolorTriticum dicoccoides51.7256.1692.9465forward
CNT30685463Sorghum bicolorTriticum urartu51.7252.2592.69465forward
CNT30621216Sorghum bicolorCajanus cajan43.9451.7789.11395forward
CNT30108136Sorghum bicolorOryza longistaminata46.3852.0689.93417forward

Expression of CNT30362790

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MSLVAGDEVGGVGPGVVVDWVSQMARMLCAWIRLGLPR*

>peptide 2 (29 aa)
MAQREWITSSSRFLAKVSGSADSPAVSQP*

>peptide 3 (37 aa)
MVMRPSPKEPTLMGVPAIAVEEIDMVEAAIDEQTLRA*

>peptide 4 (30 aa)
MQRETRDTHAANLQHQSIHVRPLRKDNGVA*

Sequence

>CNT30362790
CTAGGAAGTACTATAAAAACAGCAGAAAGCATCGCAGACGAACAAATTAATGGATGACCTTAATCTGACAAATCAATAATTAACCACCGGGAAACAAAAC
CACAACTACTATTGCACAAGCATCGTTCGTCTTAGTGTACAACGCCAACTCATCATCATCTCGACTTGCCCCCTGAAATGCAACGTGAAACAAGAGACAC
ACATGCAGCTAACTTGCAGCATCAATCAATCCACGTACGCCCTCTCCGAAAAGACAATGGAGTTGCATAGCCAACTGAGCAGCTGATGAGCTTAGTTGCC
GGGGACGAAGTTGGTGGCGTAGGCCCAGGCGTTGTTGTTGACTGGGTCAGCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTGGGGTTGCCCAGGT
AGTCCAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCA
GCCGAGCGCGCCCAGCATGGCCCAGCGGGAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGCCCCGCGGTGTCCCAG
CCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGCTCGCCGGAGAAGGGGCCGAGGTACTTGACGCGGTCGGGCCCGTACCAGGGACTGCCGG
ACGCCGCCACCTTGGGCTTGGCCGCGGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGAGCCCACCTTGATGGGGGTGCCGGCCATCGCCGTGGAGGA
GATCGACATGGTGGAGGCGGCCATTGATGAGCAAACTCTGCGAGCGTGAGAGTGTTGGACCGGTTGCTAGCTGCTGCTGCTGCTGCTGGTGGTGGAGTG