Detailed information on CNT30362646


BLAST search results

BLAST vs Swiss-Prot:
sp|A2YWQ1|HSP81_ORYSI, E-value = 9e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30145759Sorghum bicolorMedicago truncatula33.9728.2387.85107forward
CNT30311909Sorghum bicolorCamelina sativa22.2214.888.5770forward

Expression of CNT30362646

Peptides detected in this lncRNA

>peptide 1 (84 aa)
GGVETDTELSNHGHISTSSEGLHEFLGPGPGDGPQVVDEVGLGHADAAVDDGESVGVEGVDDEGEQLVDLGLKGEGLRVRRHGS*

>peptide 2 (45 aa)
MDTSAPAARASMNSLVPDLAMVPRLLTRSDLVMPMPLSMMERVLE*

Sequence

>CNT30362646
AGGCGGAGTAGAAACCGACACCGAACTGTCCAATCATGGACACATCAGCACCAGCAGCGAGGGCCTCCATGAATTCCTTGGTCCCGGACCTGGCGATGGT
CCCCAGGTTGTTGACGAGGTCGGACTTGGTCATGCCGATGCCGCTGTCGATGATGGAGAGAGTGTTGGAGTAGAAGGTGTTGATGATGAGGGAGAGCAGC
TGGTTGATCTCGGCCTGAAAGGCGAAGGTCTCCGTGTCCGTCGCCATGGTTCCTGAACTCCGAAGCTTGGAGGAGGCGGCGGCTAGGGTTGGAGGCTTGA
GGGGTTTCCGGATCG