Detailed information on CNT30362636


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001022, E-value = 5e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30282434Sorghum bicolorChenopodium quinoa22.728.6485.85212forward
CNT30381504Sorghum bicolorManihot esculenta24.4426.688.16228forward
CNT30402788Sorghum bicolorBeta vulgaris40.8430.2985.3381forward
CNT30631057Sorghum bicolorVigna unguiculata30.1233.0282.92281forward
CNT30712266Sorghum bicolorGlycine max15.7653.6590.48147forward
CNT3094731Sorghum bicolorSolanum tuberosum30.8719.1984.38288forward
CNT30298225Sorghum bicolorTriticum aestivum31.338.1791.78292forward
CNT30394033Sorghum bicolorTriticum turgidum33.5523.1392.01313forward
CNT30560521Sorghum bicolorActinidia chinensis24.0131.1586.16224forward
CNT30477326Sorghum bicolorArabidopsis halleri33.1234.9587.06309forward
CNT30481150Sorghum bicolorChara braunii27.6518.2685.66258forward
CNT30103353Sorghum bicolorOryza rufipogon28.1926.290.49263forward
CNT30724231Sorghum bicolorLupinus angustifolius7.528.2388.5770forward

Expression of CNT30362636

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MLLPVICQALVEGVDDEGEQLVDLSLKSEGLRVRRHGALIPELWSLQEAARVGGVFGS

>peptide 2 (67 aa)
MLRPSLSMRWIRVPKVLGSSRTSLMTLHNPSNFSFSSSFLFFSSSVSSSFRPSLVAETSFLPSNSLS*

>peptide 3 (64 aa)
DNMPKSSKDYHRSGSRLSQVTRDKRQASGLSRPPPSCFHRRRPPVEASQLQPQQTRPHRCLDRA*

Sequence

>CNT30362636
CGATAACATGCCAAAATCCTCGAAAGATTATCACAGGTCAGGCTCAAGATTATCACAAGTAACTAGGGATAAACGACAAGCATCCGGGCTTAGTCGACCT
CCTCCATCTTGCTTTCACCGGCGTCGTCCTCCAGTGGAGGCATCTCAGCTTCAGCCTCAGCAGACTCGTCCTCATCGATGCTTAGACCGAGCTTGAGCAT
GCGGTGGATCCGGGTCCCGAAGGTGTTGGGGTCATCCAGAACCTCCTTGATGACTTTGCACAACCCCTCAAACTTTTCCTTCAGCTCCTCCTTCCTCTTC
TTCTCGTCCTCGGTCTCGTCAAGCTTCAGACCCTCCTTGGTGGCAGAGACAAGCTTCTTGCCCTCAAACTCCTTGAGCTGACCAACAGCATACTCATCAA
TGGCATCAACCATGTACAAGACCTCATAGCCCCTCTTCTTCAGCTTCTCCAGGAAGGGGGAGTTCTCCACTGCCTTCTTGCTCTCACCAGTGATATAATA
GATGTCGTTCTGTCCCTCCTTCATCCTGGTCACGTAGTCCTTGAGGCTGGTCCTCAGAGTCAACAATACCCTTAACGAAGCTCAGCCACTCAGGGATCAG
CTCCTCGCAGTTGTCCATGATGAACACCCTGCGCACATAGAGCTTGATGTTGTTTTGCTTCTTCTTGGTGTCAAAGAGATCAAAGGGGGCCCTCTTAGGA
ACAAAGAGAACAGCCTTGAACTCCAGCTGACCCTCCACAGAGAAGTGCTTCACAGCCAGATGCTCCTCCCAGTCATTTGTCAAGCTCTTGTAGAAGGTGT
TGATGATGAGGGAGAGCAGCTGGTTGATCTCAGCCTGAAAAGCGAAGGTCTCCGTGTCCGTCGCCATGGCGCCCTGATTCCTGAGCTCTGGAGCTTGCAG
GAGGCGGCTAGGGTTGGAGGGGTTTTCGGATCG