CANTATAdb - search

Detailed information on CNT30362617

BLAST search results

BLAST vs Swiss-Prot:
sp|P08222|CB22_CUCSA, E-value = 2e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30671434	Sorghum bicolor	Setaria viridis	87.95	95.71	89.69	737	forward
CNT30394515	Sorghum bicolor	Triticum turgidum	35.32	36.01	91.89	296	forward
CNT30684416	Sorghum bicolor	Triticum urartu	48.81	47.61	89.73	409	forward
CNT30103258	Sorghum bicolor	Oryza rufipogon	51.79	41.49	88.71	434	forward

Expression of CNT30362617

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MAWTKKPNMENMARRPFLSSFTLSSAKASGSSARPRGSKLPPG*

>peptide 2 (30 aa)
MQRETRDTHAANLQHQSIHVRPLRKDNGVA*

>peptide 3 (37 aa)
MVMRPSPKEPTLMGVPAIAVEEIDMVEAAIDEQTLRA*

Sequence

>CNT30362617
GACGAACAAATTAATGGATGACCTTAATCTGACAAATCAATAATTAACCACCGGGAAACAAAACCACAACTACTATTGCACAAGCATCGTTCGTCTTAGT
GTACAACGCCAACTCATCATCATCTCGACTTGCCCCCTGAAATGCAACGTGAAACAAGAGACACACATGCAGCTAACTTGCAGCATCAATCAATCCACGT
ACGCCCTCTCCGAAAAGACAATGGAGTTGCATAGCCAACTGAGCAGCTGATGAGCTTAGTTGCCGGGGACGAAGTTGGTGGTCAGCGAGGTTCTCGAGCG
GGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGAAGGC
CTCGGGATCGTCGGCCAGGCCGAGGGGGTCGAAGCTGCCGCCTGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGCCCGCCGGCAATGCGGTAGCCCTCG
ACGGCGCCCATGAGCACGACCTGGACGGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTGGGGTAGCTCGGGGGCTCGCCGGAGAAGGGGCCGA
GGTACTTGACGCGGTCGGGCCCGTACCAGGGACTGCCGGACGCCGCCACCTTGGGCTTGGCCGCGGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGA
GCCCACCTTGATGGGGGTGCCGGCCATCGCCGTGGAGGAGATCGACATGGTGGAGGCGGCCATTGATGAGCAAACTCTGCGAGCGTGAGAGTGTTGGACC
GGTTGCTAGCTGCTGCTGCTGCTGCTGGTGGTGGAGTG