Detailed information on CNT30362547


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84M43|CESA2_ORYSJ, E-value = 2e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671433Sorghum bicolorSetaria viridis31.6947.6894.81154forward
CNT30270249Sorghum bicolorChenopodium quinoa27.986.883.82136forward
CNT30287901Sorghum bicolorTriticum aestivum20.3737.3692.9399forward
CNT30393905Sorghum bicolorTriticum turgidum32.5148.6288.61158forward
CNT30314318Sorghum bicolorCamelina sativa17.728.186.0586forward
CNT30450304Sorghum bicolorSaccharum spontaneum39.334.5497.91191forward
CNT30216Sorghum bicolorZea mays20.3732.1488.8999forward
CNT30689838Sorghum bicolorTriticum urartu54.7389.2688.35266forward
CNT30102429Sorghum bicolorOryza rufipogon46.7131.9390.75227forward

Expression of CNT30362547

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MTQNCSFLHHSSIPTPLHLISRIPVAKIEIKREMNQILAKLLI

>peptide 2 (86 aa)
MPHEIPATTPTRLMIRMVVGGIRSVVHLNMYSSAKSPSSSEAFEETLEDGEKVGRDTSNDPELFIPPPLVNSNTTPPHLEDTSGKN*

>peptide 3 (39 aa)
MTPPAYNLTDNWWQWHIRILKNTGRGISLFLQTFHFPSS*

Sequence

>CNT30362547
ATGCATATCAACACAAGTAACTTTGTGATAAACAATATCCCCTGGTCTGTACGTAGCTGTAAATGACGCCACCTGCTTATAACTTAACAGACAATTGGTG
GCAGTGGCACATCCGTATTCTCAAAAACACGGGTCGTGGTATTTCTCTGTTTCTACAAACCTTCCACTTTCCTAGCAGTTGATGCCACATGAGATACCAG
CAACAACACCAACCAGGTTGATGATCAGAATGGTCGTTGGTGGGATCAGAAGCGTTGTCCACTTGAACATGTACAGCTCCGCAAAGTCACCGTCTTCATC
TGAGGCCTTTGAGGAGACCCTGGAAGACGGCGAAAAGGTGGGCAGAGATACCTCCAATGACCCAGAATTGTTCATTCCTCCACCACTCGTCAATTCCAAC
ACCACTCCACCTCATCTCGAGGATACCAGTGGCAAAAATTGAAATAAAGAGAGAAATGAACCAAATACTAGCGAAGTTGCTAATCT