Detailed information on CNT30362364


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 2e-134

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186317Sorghum bicolorSecale cereale56.5857.6691.15576forward
CNT30299182Sorghum bicolorTriticum aestivum55.753.3492.95567forward
CNT30552325Sorghum bicolorOryza glaberrima35.3638.5993.61360forward
CNT30440100Sorghum bicolorAegilops tauschii55.755.5993.3567forward
CNT30250793Sorghum bicolorAvena sativa62.9762.8489.7641forward
CNT30665254Sorghum bicolorTriticum dicoccoides55.756.8792.95567forward
CNT30685359Sorghum bicolorTriticum urartu44.1144.7293.1449forward
CNT30596886Sorghum bicolorOryza meridionalis51.6751.6792.02526forward
CNT30603531Sorghum bicolorOryza punctata55.551.8391.86565forward
CNT3063160Sorghum bicolorSelaginella moellendorffii50.265.4388.06511forward

Expression of CNT30362364

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MQRETRDTHAANLQHQSIHVRPLRKDNGVA*

>peptide 2 (37 aa)
MVMRPSPKEPTLMGVPAIAVEEIDMVEAAIDEQTLRA*

>peptide 3 (43 aa)
MAWTKKPNMENMARRPFLSSFTLSSAKASGSSARPRGSKLPPG*

>peptide 4 (67 aa)
MRPPSLKIWEPALNQTASPNLTPLRASSSGKTQPSAPSMAQREWITSSSRFLAKVSGSADSPAVSQP*

Sequence

>CNT30362364
CCTAGAGCTAGGAAGTACTATAAAAACAGCAGAAAGCATCGCAGACGAACAAATTAATGGATGACCTTAATCTGACAAATCAATAATTAACCACCGGGAA
ACAAAACCACAACTACTATTGCACAAGCATCGTTCGTCTTAGTGTACAACGCCAACTCATCATCATCTCGACTTGCCCCCTGAAATGCAACGTGAAACAA
GAGACACACATGCAGCTAACTTGCAGCATCAATCAATCCACGTACGCCCTCTCCGAAAAGACAATGGAGTTGCATAGCCAACTGAGCAGCTGATGAGCTT
AGTTGCCGGGGACGAAGTTGGTGGTCAGCGAGGTTCTCGAGCGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGA
GGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGAAGGCCTCGGGATCGTCGGCCAGGCCGAGGGGGTCGAAGCTGCCGCCTGGGTAGAGCGGGTC
GACGACCTCGCCGAGCGGCCCGCCGGCAATGCGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTG
CGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCCAGCATGGCCCAGCGGGAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGT
CGGCCGACAGCCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGCTCGCCGGAGAAGGGGCCGAGGTACTTGACGCG
GTCGGGCCCGTACCAGGGACTGCCGGACGCCGCCACCTTGGGCTTGGCCGCGGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGAGCCCACCTTGATG
GGGGTGCCGGCCATCGCCGTGGAGGAGATCGACATGGTGGAGGCGGCCATTGATGAGCAAACTCTGCGAGCGTGAGAGTGTTGGACCGGTTGCTAGCTGC
TGCTGCTGCTGCTGGTGG