Detailed information on CNT30362291


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Sorghum bicolorOryza sativa62.724.4894.78249forward
CNT30526549Sorghum bicolorPhaseolus vulgaris40.0524.0987.42159forward
CNT30201935Sorghum bicolorPisum sativum53.1512.3887.68211forward
CNT30713469Sorghum bicolorMalus domestica golden42.5733.886.98169forward
CNT30627902Sorghum bicolorDaucus carota60.7127.0286.31241forward
CNT30147977Sorghum bicolorBrachypodium distachyon62.7220.3393.57249forward
CNT30497263Sorghum bicolorDigitaria exilis62.7235.3294.38249forward
CNT30333024Sorghum bicolorCynara cardunculus39.5515.4184.71157forward

Expression of CNT30362291

Peptides detected in this lncRNA

>peptide 1 (37 aa)
QSERSGRTGFMPERRNTQRKVTSGESSERESFFVSRQ*

>peptide 2 (47 aa)
MSCLEIGCLRYRAPTATNSPPPHVKLVLVVAPGAVTPGAPAWIFCIH*

Sequence

>CNT30362291
CAATCCGAAAGGTCAGGAAGAACTGGCTTTATGCCGGAAAGAAGGAATACTCAACGAAAAGTAACTAGCGGCGAATCGTCTGAGCGGGAATCGTTCTTCG
TCTCTCGTCAATGAGCTGTCTTGAGATCGGTTGCCTACGCTATCGGGCGCCTACAGCTACTAACTCGCCGCCTCCCCACGTTAAGCTGGTACTTGTTGTT
GCACCAGGAGCTGTTACGCCAGGCGCGCCAGCATGGATATTTTGTATCCATTGAGTAAAGATAGGTTGTAATTGTATGGCGGTATCCGAAAACATATCTT
AGGGACGGCCTAAAGCACTCATGGTATCATTATGAATGTACAAGCCAAAACTGTGAAAACCCAGAAATATACATACCCAGTTAAGGTGGGATATGAA