Detailed information on CNT30362263


BLAST search results

BLAST vs Swiss-Prot:
sp|Q85WV9|YCF68_PINKO, E-value = 2e-14

BLAST vs NONCODE:
NONMEST001876, E-value = 2e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533065Sorghum bicolorEucalyptus grandis22.7726.0690.36197forward
CNT30712184Sorghum bicolorGlycine max52.727692.11456forward
CNT30637537Sorghum bicolorCapsicum annuum26.5938.2781.74230forward
CNT30586565Sorghum bicolorMusa acuminata13.2925.2787.83115forward
CNT30556102Sorghum bicolorOryza glaberrima25.4335.9597.27220forward
CNT30714122Sorghum bicolorMalus domestica golden26.2454.9690.75227forward
CNT30627901Sorghum bicolorDaucus carota52.9539.1594.1458forward
CNT30684661Sorghum bicolorTriticum urartu52.4910.7398.9454forward
CNT30720008Sorghum bicolorTriticum spelta10.8738.6898.9494reverse complement
CNT30342876Sorghum bicolorEragrostis tef13.7633.4394.96119forward
CNT30479986Sorghum bicolorArabidopsis halleri11.6840.494.06101reverse complement
CNT30595932Sorghum bicolorOryza meridionalis47.7531.0898.55413forward
CNT3057391Sorghum bicolorAmborella trichopoda40.586.9584.9351forward
CNT30318962Sorghum bicolorAsparagus officinalis52.3721.7396.91453forward
CNT30148380Sorghum bicolorBrachypodium distachyon27.6317.6399.16239forward
CNT3099863Sorghum bicolorOryza rufipogon15.8433.9189.05137reverse complement
CNT30575742Sorghum bicolorOryza barthii46.7190.1896.04404forward
CNT30337279Sorghum bicolorCynara cardunculus14.3447.5183.87124forward
CNT30726606Sorghum bicolorLupinus angustifolius53.0638.9391.94459forward

Expression of CNT30362263

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MDSREERSRGGSPRTARIPRVNRKFDLHGISPESPHLSS*

>peptide 2 (49 aa)
SQGISYHQVRKKPRFLEFLISISCKRRGSKAKTRTIKATSPFRRNCGSS*

>peptide 3 (88 aa)
MGSHLNRPIYPPEEKFVWFQTPIQTGGVRHANVPWMIHIFGSGADEHIELSMWLRALTAQAQRRNYQGRPYATKIFCCCGNKKKSKSH*

>peptide 4 (33 aa)
MRRRFFVAVGIRKSPNPIDIITESGRRGITQAY*

>peptide 5 (36 aa)
LLRGFLTIKLEKSLDFWNSLFLSHAKEEDPRQRREQ*

Sequence

>CNT30362263
CTTCTCAGGGGATTTCTTACCATCAAGTTAGAAAAAAGCCTCGATTTCTGGAATTCCTTATTTCTATCTCATGCAAAAGAAGAGGATCCAAGGCAAAGAC
GAGAACAATAAAAGCAACAAGTCCTTTTAGGAGGAATTGTGGGTCTTCTTAATCCTCTATTGGGCACAAGAAAAAGGCTCGAATGGTACGATCCCTCCGT
CACCCCAGAATGAAAGGGGTGATCTCGTATTCTTGGTCTGTGAAGATGCGTTGTTAGGTGCTCCATTTTCCCATTGAGGACGAACCTCAACCTGTGCTCG
AGAGATAGCTCTCCATACACTGATAAGGGATGTATGGATTCTCGAGAAGAGAGGAGCCGCGGTGGCTCCCCCCGGACCGCCCGGATCCCACGAGTGAATA
GAAAGTTCGATCTACATGGGATCTCACCTGAATCGCCCCATCTATCCTCCTGAGGAGAAGTTTGTTTGGTTTCAAACTCCGATTCAAACAGGAGGAGTAC
GCCATGCTAATGTGCCTTGGATGATCCACATCTTCGGGTCAGGCGCTGATGAGCACATTGAACTATCCATGTGGCTGAGAGCCCTCACAGCCCAGGCACA
ACGACGCAATTATCAGGGGCGCCCATATGCGACGAAGATTTTTTGTTGCTGTGGGAATAAGAAAAAGTCCAAATCCCATTGACATAATAACTGAAAGTGG
GAGAAGAGGAATTACCCAGGCATATTGATATGTATGTTCCATAACCAAAAATTAATCTCGCGGATACATATAATTCGGAAGAATAGGTGAGTGATTCATA
CACAGCATTCCTTTCTTTTATCGAGGGTTCTAGCAATTGATATCCTTTCGCAAATAATTGAAATG