« Back to Sorghum bicolor search


Detailed information on CNT30362240


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 3e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596913Sorghum bicolorOryza meridionalis44.947.0291.21387forward

Expression of CNT30362240

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQREWITSSSRFLAKVSGSADSPAVSQP*

>peptide 2 (37 aa)
MVMRPSPKEPTLMGVPAIAVEEIDMVEAAIDEQTLRA*

>peptide 3 (32 aa)
MSLVAGDEVGGQRGCSARGSGWGCPGSPGRPR*

>peptide 4 (30 aa)
MQRETRDTHAANLQHQSIHVRPLRKDNGVA*

Sequence

>CNT30362240
CTAGGAAGTACTATAAAAACAGCAGAAAGCATCGCAGACGAACAAATTAATGGATGACCTTAATCTGACAAATCAATAATTAACCACCGGGAAACAAAAC
CACAACTACTATTGCACAAGCATCGTTCGTCTTAGTGTACAACGCCAACTCATCATCATCTCGACTTGCCCCCTGAAATGCAACGTGAAACAAGAGACAC
ACATGCAGCTAACTTGCAGCATCAATCAATCCACGTACGCCCTCTCCGAAAAGACAATGGAGTTGCATAGCCAACTGAGCAGCTGATGAGCTTAGTTGCC
GGGGACGAAGTTGGTGGTCAGCGAGGATGCTCTGCGCGTGGATCAGGCTGGGGTTGCCCAGGTAGTCCAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGC
CTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCCAGCATGGCCCAGCGGGAGTGGATC
ACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGCCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCG
GGGGCTCGCCGGAGAAGGGGCCGAGGTACTTGACGCGGTCGGGCCCGTACCAGGGACTGCCGGACGCCGCCACCTTGGGCTTGGCCGCGGTCTTGCGCAT
GGTGATGCGGCCCTCGCCGAAGGAGCCCACCTTGATGGGGGTGCCGGCCATCGCCGTGGAGGAGATCGACATGGTGGAGGCGGCCATTGATGAGCAAACT
CTGCGAGCGTGAGAGTGTTGGACCGGTTGCTAGCTGCTGCTGCTGCTGCTGGTGGTGGAGTG