Detailed information on CNT30362217


BLAST search results

BLAST vs Swiss-Prot:
sp|Q69QQ6|HSP82_ORYSJ, E-value = 2e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378101Sorghum bicolorArabidopsis thaliana68.2640.4882.91357forward
CNT30250601Sorghum bicolorAvena sativa27.5333.8888.19144forward
CNT30227528Sorghum bicolorAnanas comosus22.9416.5187.5120forward
CNT30126131Sorghum bicolorCorymbia citriodora2623.7880.88136forward
CNT30688537Sorghum bicolorTriticum urartu17.9740.6990.4394forward
CNT3055928Sorghum bicolorAmborella trichopoda37.8622.5586.36198forward
CNT30107297Sorghum bicolorOryza longistaminata25.8130.0785.93135forward
CNT30149846Sorghum bicolorBrachypodium distachyon22.9427.0985120forward
CNT30577638Sorghum bicolorOryza barthii25.0520.2286.26131forward

Expression of CNT30362217

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MDAKLEVLPDHLQDLVLLKSLTRDIQGEVLRVNNTLNEAQPLRDQLLAVVHDEHPAHIELDVVLLLLGVKEIKGG

>peptide 2 (56 aa)
GVIQAEARGQERSLEQQHHEILDRLVILVGLSALAELIHDRVLWVDLHSLFARPVI*

>peptide 3 (54 aa)
GSSRLKPEVRREVSNSSITRSLTDLSFLSASARLRSSSMIGFSGLISIVFLLDQ*

Sequence

>CNT30362217
GGGGTCATCCAGGCTGAAGCCAGAGGTCAGGAGAGAAGTCTCGAACAGCAGCATCACGAGATCCTTGACCGACTTGTCATTCTTGTCGGCCTCAGCGCGC
TTGCGGAGCTCATCCATGATAGGGTTCTCTGGGTTGATCTCCATAGTCTTTTTGCTCGACCAGTGATATAATAGATGTCGTTCTGTCCCTCCTTCATCCT
GGTCACGTAGTCCTTGAGGCTGGTCAGCTCATCACCACTCTTGGTGGAGTGGTATCTCAGAAGCTCGGCGATCTTGGTCCTGTTCTGTGAGTCCTCATGG
ATGCCAAGCTTGAGGTTCTTCCGGATCACCTTCAGGATCTTGTTCTGCTGAAGAGTCTCACGAGAGATATTCAGGGGGAGGTCCTCAGAGTCAACAATAC
CCTTAACGAAGCTCAGCCACTCAGGGATCAGCTCCTCGCAGTTGTCCATGATGAACACCCTGCGCACATAGAGCTTGATGTTGTTTTGCTTCTTCTTGGT
GTCAAAGAGATCAAAGGGGGCCC