Detailed information on CNT30362130


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693247Sorghum bicolorOryza sativa42.772088.03142forward
CNT30522232Sorghum bicolorSetaria italica61.4520.4695.1204forward
CNT30379859Sorghum bicolorManihot esculenta26.5114.0685.2388forward
CNT30592165Sorghum bicolorMusa acuminata34.0440.2192.04113forward
CNT30553602Sorghum bicolorOryza glaberrima50.936.4287.57169forward
CNT30679064Sorghum bicolorTriticum urartu21.997.889.0473forward
CNT3052558Sorghum bicolorAmborella trichopoda44.2835.6885.71147forward
CNT3038429Sorghum bicolorCucumis melo30.7232.1884.31102forward
CNT30101150Sorghum bicolorOryza rufipogon28.6114.5791.5895forward
CNT30575951Sorghum bicolorOryza barthii43.3733.1888.89144forward
CNT30497116Sorghum bicolorDigitaria exilis23.197.8289.6177forward
CNT30113199Sorghum bicolorFicus carica45.1834.483.33150forward
CNT30333083Sorghum bicolorCynara cardunculus26.8124.1285.3989forward
CNT30726195Sorghum bicolorLupinus angustifolius27.1115.1383.3390forward

Expression of CNT30362130

Peptides detected in this lncRNA

>peptide 1 (88 aa)
VLAEQARGGDAARVERREGDARLLVVPAVELLHRQHVAHLAVLVRLGAVELPAVDHHRAANAVEAAGEAETGRRAGDDRRALAEGLLA*

>peptide 2 (74 aa)
MLHTLLSLYALAPSNSPPSIITELPMPLRPPARPRPDDAPVMTAVPLRRVFLPDGDAGRAEGRKDVAAWSAMSSG

Sequence

>CNT30362130
GTGCTCGCGGAACAGGCCCGTGGTGGCGATGCAGCCCGGGTAGAGCGACGCGAAGGTGACGCCCGTCTCCTCGTGGTACCGGCGGTGGAACTCCTGCATC
GTCAGCATGTTGCACACCTTGCTGTCCTTGTACGCCTTGGCGCCGTCGAACTCCCCGCCGTCGATCATCACCGAGCTGCCAATGCCGTTGAGGCCGCCGG
CGAGGCCGAGACCGGACGACGCGCCGGTGATGACCGCCGTGCCCTTGCGGAGGGTCTTCTTGCCTGACGGCGACGCGGGGAGGGCGGAGGGGAGGAAGGA
CGTCGCCGCCTGGAGCGCCATGTCGAGCGGAG