Detailed information on CNT30362117


BLAST search results

BLAST vs Swiss-Prot:
sp|P19954|PRSP1_SPIOL, E-value = 4e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30192954Sorghum bicolorSecale cereale33.234.7590.2482forward
CNT30295245Sorghum bicolorTriticum aestivum20.659.5794.1251forward
CNT30662382Sorghum bicolorTriticum dicoccoides33.235.6589.0282forward
CNT30444291Sorghum bicolorSaccharum spontaneum20.245.1510050forward
CNT30684021Sorghum bicolorTriticum urartu27.1316.8891.0467forward
CNT30338041Sorghum bicolorEragrostis tef26.3220.9793.8565forward
CNT30579138Sorghum bicolorEchinochloa crusgalli20.654.5998.0451forward
CNT30558870Sorghum bicolorPanicum hallii28.7413.692.9671forward

Expression of CNT30362117

Peptides detected in this lncRNA

>peptide 1 (80 aa)
SVSFSLILRSLRLMMAARRTSTSRTRWQCLDTARPTLSSMCSLSLSLSFTFLPCMMRRTDERGPSQAMRTEKETRRRRRHL

>peptide 2 (81 aa)
LRLLLLDLAELALDDGGEAHVHLPDQVAVLGHRPAHLVLDVLLELVAQLHVPALHDEAHRREGPVPGHAHGEGDAAAETASG

Sequence

>CNT30362117
CCTCCGTCTCCTTCTCCTTGATCTTGCGGAGCTTGCGCTTGATGATGGCGGCGAGGCGCACGTCCACCTCCCGGACCAGGTGGCAGTGCTTGGACACCGC
CCGGCCCACCTTGTCCTCGATGTGCTCCTTGAGCTTGTCGCTCAGCTTCACGTTCCTGCCCTGCATGATGAGGCGCACCGACGAGAGGGGCCCGTCCCAG
GCCATGCGCACGGAGAAGGAGACGCGGCGGCGGAGACGGCATCTGGG