Detailed information on CNT30362113


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695553Sorghum bicolorOryza sativa20.6924.6895.62137forward
CNT30677738Sorghum bicolorSetaria viridis21.1534.8397.14140forward
CNT30522020Sorghum bicolorSetaria italica20.8529.1197.1138forward
CNT30298930Sorghum bicolorTriticum aestivum21.1516.8597.86140forward
CNT30393705Sorghum bicolorTriticum turgidum21.1515.3897.86140forward
CNT30249161Sorghum bicolorAvena sativa17.5224.7395.69116forward
CNT30665854Sorghum bicolorTriticum dicoccoides21.1526.6297.86140forward
CNT30370885Sorghum bicolorOryza glumipatula20.6919.7495.62137forward
CNT30148202Sorghum bicolorBrachypodium distachyon18.1322.0290120forward

Expression of CNT30362113

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MAMGARRRASWKEGDERVVDWMEKGAARACS*

>peptide 2 (32 aa)
SVLLCKEATLSRANEHHVHIIPRCASTVTKKT*

>peptide 3 (37 aa)
MSKDSLPVNLTSMGLTFLPMLRKFCPTPCLPALTFSG*

Sequence

>CNT30362113
TCGGTGTTATTATGCAAAGAAGCAACGTTATCACGAGCAAATGAACATCATGTACATATAATCCCACGCTGCGCCTCCACGGTCACCAAGAAGACTTGAT
AATAAAATTACACATGGATCATCTATCAAACCATGCATGCATGCATGGCGCCACCAGCAGCTAACTTATAGTAATAATTCATATAAGAAGAACACGCAAG
TCCTTTAAGCATGCGACGGAGGATTAGATGTCGAAGGATTCCTTGCCGGTGAACTTGACCTCGATGGGGCTGACGTTCTTGCCGATGCTGCGGAAGTTCT
GCCCAACGCCCTGCCTGCCGGCGTTGACCTTCTCCGGGTAGACGCCGTCCTTGGGGTGGAGCTGCGGGGGCACGAAACCCTTGGGGGCCTCCTCAGTCAC
CGCCGCCGCCGCCGGTCCGTCGTCGGACGCGCGGAGCGGGGCCGGACCGCGGGACGACGGCATCGCGAGCTGCGAGCTCAGCTGCCGTGGCTTCGCCCAG
GCGGCCGCCAGCAGGTGGCGCGTGGCGGCGGAGGCTTGCGTGGCCATGGCCATGGGCGCGCGGCGGAGAGCTTCTTGGAAGGAAGGAGATGAGAGAGTAG
TGGACTGGATGGAGAAGGGCGCCGCGCGAGCATGCAGCTAAGAGGACAAGAGAGGCTGGTGT