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Detailed information on CNT30362074


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10MW3|PDC2_ORYSJ, E-value = 3e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522505Sorghum bicolorSetaria italica37.8355.3297.18213forward
CNT30640997Sorghum bicolorNymphaea colorata19.5428.8786.36110forward
CNT30378612Sorghum bicolorArabidopsis thaliana21.6739.3581.97122forward
CNT3021436Sorghum bicolorCitrullus lanatus14.9226.0985.7184forward
CNT30562761Sorghum bicolorActinidia chinensis34.117.3488.02192forward
CNT30553156Sorghum bicolorOryza glaberrima44.7639.8184.13252forward
CNT30146603Sorghum bicolorMedicago truncatula21.6732.1983.61122forward
CNT30136353Sorghum bicolorLolium perenne47.9629.7794.44270forward
CNT30128751Sorghum bicolorCorymbia citriodora26.8229.6786.09151forward
CNT30355760Sorghum bicolorLactuca sativa32.3327.2580.22182forward
CNT30369917Sorghum bicolorOryza glumipatula50.9847.4486.06287forward
CNT30154533Sorghum bicolorPrunus persica24.3331.2186.13137forward
CNT30706321Sorghum bicolorPrunus avium27.3527.987.01154forward
CNT3026328Sorghum bicolorPopulus trichocarpa25.0426.783.69141forward
CNT30101892Sorghum bicolorOryza rufipogon47.9644.1291.48270forward
CNT30576296Sorghum bicolorOryza barthii47.0756.2692.45265forward
CNT30113754Sorghum bicolorFicus carica20.0727.6388.5113forward

Expression of CNT30362074

Peptides detected in this lncRNA

>peptide 1 (57 aa)
VYLGDPLVVLIGSGVLLNPLSQFRQVLLHHHTSECRPITNYHTFRLDDDGLVLLEEE*

>peptide 2 (59 aa)
MALSTLRPPTVNVTAQAPTPRARAYPSAAYPALSSLQQPTRRSPGSAIRWSSSVRLKSPG

Sequence

>CNT30362074
CAGTTTACCTTGGAGATCCTCTTGTAGTTCTCATAGGCAGTGGTGTTCTTCTTAACCCTCTTAGCCAATTCAGACAAGTACTCCTTCATCATCACACATC
CGAATGCCGGCCCATTACCAATTATCACACGTTCAGGCTGGACGATGATGGCCTTGTCCTTCTTGAGGAGGAATGAGTAGCCAACAGAGCTGTAGTCATT
GAAAATGGGGCCTGCAAAGAGGTAGGCATCTGCGGACTCAACAATCTCAGCACAGAAGGCAGTGCTGACGGCGCCCCAGTAGGTGCCGATGAAGTGGGGG
ATGCGGTTGGTCCCGTAGTCGTTGGAGTTGGGCCCGCCGGCGATGCAGATGACGGGCAGGTTCTCGCTGTAGGCGCCCGCGATGGCGTTGAGCACGCTGA
GGCCCCCGACGGTGAACGTGACGGCGCAGGCCCCGACGCCGCGCGCGCGCGCGTACCCGTCGGCGGCGTACCCGGCGTTGAGCTCGTTGCAGCAGCCGAC
GAGGCGCAGCCCGGGCTCGGCGATCAGGTGGTCGAGCAGCGTGAGGTTGAAGTCCCCGGGGAC