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Detailed information on CNT30361949


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 3e-101

BLAST vs NONCODE:
NONSLYT002586, E-value = 6e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547471Sorghum bicolorIpomoea triloba29.1545.4780.08246forward
CNT3019595Sorghum bicolorCitrullus lanatus45.9769.9182.99388forward
CNT30665536Sorghum bicolorTriticum dicoccoides54.1569.3586.65457forward
CNT30705326Sorghum bicolorPrunus avium44.6729.3483.02377forward

Expression of CNT30361949

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MVTLSFCSMGHNFSFWSFMQVLMICLIGS*

>peptide 2 (58 aa)
VRGNLALNSNTHNRGDRELHCSDRACINLLLISECSVLRDELVQTNHSNSVATRNILN*

>peptide 3 (49 aa)
MIRTFIPVATFPEKTRPKAKNLPLSDAGIIFETYSIRGPSGSQFLMAVA*

>peptide 4 (45 aa)
MNWSRPTIATVLPQGTSSTDSCFFPIQITVRWTLFTYRSFFCPGT*

Sequence

>CNT30361949
GTCAGAGGCAACCTTGCACTGAACAGCAACACGCACAACAGGGGAGACAGAGAACTTCATTGCTCTGATCGGGCATGCATCAACCTCCTTCTCATTAGTG
AGTGTAGCGTTCTTCGTGATGAACTGGTCCAGACCAACCATAGCAACAGTGTTGCCACAAGGAACATCCTCAACTGACTCTTGTTTCTTTCCCATCCAGA
TAACGGTACGCTGGACACTCTTCACATACAGATCCTTCTTCTGCCCAGGGACATAGTTGGGACCCATGATCCGAACCTTCATACCAGTAGCAACCTTCCC
TGAGAAGACACGACCGAAGGCAAAGAACCTGCCCTTGTCGGATGCTGGAATCATCTTCGAAACATACAGCATAAGAGGGCCCTCCGGATCACAGTTTCTG
ATGGCAGTTGCATAGACATCATCAAGGGGCCCCTCATACAAGTTCTCCACACGATACTTTTGAGCCTTTGCCGGGGAAGGAAGGTGGAATATCATCAAGG
GGCCCCTCATACAAGTTCTCCACACGATACTTTTGAGCCTTTGCCGGGGAAGGAAGGTGGAATATCATCATCTCGAGCAGTGCAGTGCTTGCTGGTAGCC
ACGTTTGCATAACACGCTTCATCAAAGCTTTGCCAATCAATTCCTTCTCATCAGACTTCATGGTAACATTGAGCTTTTGCAGCATGGGCCACAATTTCTC
CTTCTGGTCGTTCATGCAGGTGTTGATGATTTGCTTGATTGGCTCATAGCAGAACTGAACAAATCCTCTCTTGCAGGTAGGGGAGCCTGTGTTCTTGGTT
GTCCATTTCTTGGTGGCAGGGTCAAAGAAGTTCTCACCCCAAAG