Detailed information on CNT30361875


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 9e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674978Sorghum bicolorSetaria viridis22.9434.0194.47253forward
CNT30640134Sorghum bicolorNymphaea colorata27.3843.985.1302forward
CNT30373037Sorghum bicolorArabidopsis thaliana43.4323.5183.92479forward
CNT30728649Sorghum bicolorCorchorus capsularis40.2540.7783.11444forward
CNT30405829Sorghum bicolorBeta vulgaris43.6158.2381.29481forward
CNT30224110Sorghum bicolorHordeum vulgare10.4338.8588.7115forward
CNT30510528Sorghum bicolorSolanum lycopersicum43.5237.2784.17480forward
CNT30445994Sorghum bicolorSaccharum spontaneum46.0635.6796.85508forward
CNT30210789Sorghum bicolorHelianthus annuus19.3158.8481.22213forward
CNT30479087Sorghum bicolorArabidopsis halleri17.5966.6786.6194forward

Expression of CNT30361875

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MVKDTLGERLTRGCSPQLAGEPKRLDDREVSLDVVERGTRPLHLLKHMPSLLVQNTVDTTKLFDCTENHRIRLRQTLQTFD*

>peptide 2 (49 aa)
MIRTFIPVATFPEKTRPKAKNLPLSDAGIIFETYSIRGPSGSQFLMAVA*

>peptide 3 (45 aa)
MNWSRPTIATVLPQGTSSTDSCFFPIQITVRWTLFTYRSFFCPGT*

Sequence

>CNT30361875
GCACAGCGTTAATAAGACAGTGGATATAAGAAATACACCCGGAAAATAAGTATATAACCAATTACTAAACCAAAGATACCACCTCTGTTTCATCTGCTAC
ATCAAAACGGATATCAAAATAGTGTCTCAGGCTCTCAGCACAGATTGACAAACTACATGATGACCAATATAGTTCAGAGACAGGTACATTAACTAAAACG
AGAGAAAATATTCAAGTCGTTCCCAATACAATAGACAAATTGACGATTAAACCAGCAATAGTAACAGTAGAACAAACAACCAAAAATTTAGAGCTTGTCC
TCAAACTCAGAGAGAGGGGTCATCTGTTCCTTGAGACCCTTCCTCTTGCGGATATCCAGCACCAGCTGAGCAGCCTGGGAGCCAGCCTCCAAAGGATCAG
AGCCCATCATGTCCCAATGGTCAAAGACACACTGGGGGAACGCCTGACCAGAGGTTGCAGCCCTCAGTTGGCTGGAGAACCCAAACGACTCGATGACAGG
GAGGTAAGCCTTGATGTTGTAGAGCGGGGTACCCGGCCTCTGCATCTCCTCAAACACATGCCCTCTCTTCTGGTTCAGAACACCGTAGATACCACCAAAC
TCTTCGATTGTACAGAGAACCATAGGATCAGACTTCGCCAGACGCTTCAAACCTTCGACTAGCTTGGGAAGGTCAGAGGCAACCTTGCACTGAACAGCAA
CACGCACAACAGGGGAGACAGAGAACTTCATTGCTCTGATCGGGCATGCATCAACCTCCTTCTCATTAGTGAGTGTAGCGTTCTTCGTGATGAACTGGTC
CAGACCAACCATAGCAACAGTGTTGCCACAAGGAACATCCTCAACTGACTCTTGTTTCTTTCCCATCCAGATAACGGTACGCTGGACACTCTTCACATAC
AGATCCTTCTTCTGCCCAGGGACATAGTTGGGACCCATGATCCGAACCTTCATACCAGTAGCAACCTTCCCTGAGAAGACACGACCGAAGGCAAAGAACC
TGCCCTTGTCGGATGCTGGAATCATCTTCGAAACATACAGCATAAGAGGGCCCTCCGGATCACAGTTTCTGATGGCAGTTGCATAGACATCATCAAGGGG
CCC