Detailed information on CNT3036187


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000873, E-value = 1e-88

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374334Cucumis meloArabidopsis thaliana22.793.0197.09206reverse complement
CNT30501326Cucumis meloCoffea canephora494.1987.58443reverse complement
CNT30307873Cucumis meloTriticum aestivum39.0583.8585.55353forward
CNT30713137Cucumis meloMalus domestica golden40.8217.4788.89369forward
CNT30688804Cucumis meloTriticum urartu49.1211.9986.71444reverse complement
CNT30328854Cucumis meloAsparagus officinalis23.0124.6290.38208reverse complement
CNT30102192Cucumis meloOryza rufipogon49.6719.6185.52449reverse complement

Expression of CNT3036187

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MHAPPYKRCLQMEARIIGKEKKFESLTSQ*

>peptide 2 (40 aa)
MRHFHRSNSYQILVPNLYACTPVQALLTNGGQDNWEREEI*

>peptide 3 (44 aa)
MDSSSSLFGGCGHTCANSGNGYKGERERKLYPTRDGRKLVSYGG*

>peptide 4 (58 aa)
HMQEGVLLGVCRGCVCSREWIPRQVCLGGVDTLARIRVTATREKEKGNCTRPGMDVNS*

Sequence

>CNT3036187
TCCACATGCAAGAAGGGGTGCTCCTAGGTGTGTGTAGGGGTTGTGTTTGTTCGCGAGAATGGATTCCTCGTCAAGTCTGTTTGGGGGGTGTGGACACACT
TGCGCGAATTCGGGTAACGGCTACAAGGGAGAAAGAGAAAGGAAACTGTACCCGACCAGGGATGGACGTAAACTCGTAAGCTACGGAGGGTAGGGATAAT
CGTCCAGGTCTCTGATTGTGAAAGAAAAAAGCCGCCCCGCCACAGGGGTTGCTTCTGCTTCCTCTCTCGTCGCTGGAGTGCTCTTGGTGAGGAGATCAAC
GGATAAGTTGCTAAAACAAAGGGGAGAGGGAGGATCAACCCGTTCAGTATCATTTCAAAGAAAGACTGTTGGCTGCTGGTAGAGACATTTCTTTGGCCCC
CTTCAAAAGGAAATGCGGGCTGGGTGAAGCTCGGCAGAGAGTTCGAGACAGGTTAATATGGTAGAATAAACAAGTCAAGAGCAAATTCTTTGGTCCTAAC
TCATATTGCATTCAGCCTCTCCTGACAGTCGAGTCGCTTTCACTCGTCTTGACCCCTCCAAAACAAAGGTCCTCAATGAGAGGATTTCTGACTCCTCCAG
CGGGACGCTAGGAGCAAAGAATTTGCGAAAAGGTCCTCAATGAGGCACTTCCATAGATCTAATTCATATCAGATTCTAGTTCCAAACCTTTATGCATGCA
CCCCCGTACAAGCGTTGCTTACAAATGGAGGCCAGGATAATTGGGAAAGAGAAGAAATTTGAATCGCTCACATCACAGTAGTAATAGTAAGTCAGTCGGG
GGAGAAAATCAGGCTATTACTTTCACATCTCTCTCTATTAAAAGATATCTATCTATCTATCGAGATCCACTGCGTGAGCAACCCGACTGTGCCTAACATG
TGCT