Detailed information on CNT30361828


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 3e-90

BLAST vs NONCODE:
NONSLYT002586, E-value = 2e-58

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693909Sorghum bicolorOryza sativa29.9210.9583.23155forward
CNT30512774Sorghum bicolorJuglans regia79.1532.8583.17410forward
CNT30636551Sorghum bicolorCapsicum annuum54.2542.5882.92281forward
CNT30224842Sorghum bicolorHordeum vulgare76.8390.8784.92398forward
CNT30441049Sorghum bicolorAegilops tauschii58.8880.6986.23305forward
CNT30263748Sorghum bicolorBrassica rapa77.855.4382.88403forward
CNT3054398Sorghum bicolorAmborella trichopoda77.858.7580.89403forward
CNT3024028Sorghum bicolorPopulus trichocarpa44.2130.9985.15229forward
CNT30119815Sorghum bicolorCitrus clementina69.117882.12358forward

Expression of CNT30361828

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MVTLSFCSMGHNFSFWSFMQVLMICLIGS*

>peptide 2 (81 aa)
ALVGCWNHLRNIQHKRALRITVSDGSCIDIIKGALRITVSDGSCIDIIKGPLIQVLHTILLSLCRGRKVEYHHLEQCSACW*

Sequence

>CNT30361828
CTGCCCTTGTCGGATGCTGGAATCATCTTCGAAACATACAGCATAAGAGGGCCCTCCGGATCACAGTTTCTGATGGCAGTTGCATAGACATCATCAAGGG
GGCCCTCCGGATCACAGTTTCTGATGGCAGTTGCATAGACATCATCAAGGGGCCCCTCATACAAGTTCTCCACACGATACTTTTGAGCCTTTGCCGGGGA
AGGAAGGTGGAATATCATCATCTCGAGCAGTGCAGTGCTTGCTGGTAGCCACGTTTGCATAACACGCTTCATCAAAGCTTTGCCAATCAATTCCTTCTCA
TCAGACTTCATGGTAACATTGAGCTTTTGCAGCATGGGCCACAATTTCTCCTTCTGGTCGTTCATGCAGGTGTTGATGATTTGCTTGATTGGCTCATAGC
AGAACTGAACAAATCCTCTCTTGCAGGTAGGGGAGCCTGTGTTCTTGGTTGTCCATTTCTTGGTGGCAGGGTCAAAGAAGTTCTCACCCCAAAGCCTCTC
CATCATCTTAGATTCATC