« Back to Sorghum bicolor search


Detailed information on CNT30361799


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639906Sorghum bicolorNymphaea colorata28.3318.8381.85270forward
CNT30524833Sorghum bicolorPhaseolus vulgaris22.6714.2883.33216forward
CNT3042646Sorghum bicolorPrunus dulcis15.6325.6985.91149forward
CNT30589303Sorghum bicolorMusa acuminata30.2239.2483.33288forward
CNT30241770Sorghum bicolorAvena sativa7.8725.693.3375forward
CNT3067156Sorghum bicolorLeersia perrieri19.8370.2692.06189forward
CNT30684140Sorghum bicolorTriticum urartu30.1242.6491.99287forward
CNT30596039Sorghum bicolorOryza meridionalis12.5945.891.67120forward
CNT30147849Sorghum bicolorBrachypodium distachyon22.4648.5389.72214forward
CNT30100699Sorghum bicolorOryza rufipogon20.1517.4592.71192forward
CNT30579178Sorghum bicolorEchinochloa crusgalli30.1223.4396.17287forward
CNT30116140Sorghum bicolorOryza nivara30.1237.2292.33287forward
CNT30603857Sorghum bicolorOryza punctata20.8822.8791.96199forward

Expression of CNT30361799

Peptides detected in this lncRNA

>peptide 1 (85 aa)
QMGQRQRRQAKTGTSSCTASSTRHSPRVASRPTYLSLGGRQDAEYQYYCSAPVKSKKRKSGTRTSCTTTVMARTGTANGATRAIF*

>peptide 2 (52 aa)
RWDKGNGARRRRERARAPPRALATRHVSPAGPLICPWVEGKMRSTSTTARLQ*

>peptide 3 (54 aa)
DGTKATAPGEDGNELVHRLEHSPLATCRQQAHLSVLGWKARCGVPVLLLGSSKK*

>peptide 4 (45 aa)
MPSTPRRRSVRRRRIAGCGARRVWRGGRRRTSRACRSVGSRSAPG*

Sequence

>CNT30361799
CAGATGGGACAAAGGCAACGGCGCCAGGCGAAGACGGGAACGAGCTCGTGCACCGCCTCGAGCACTCGCCACTCGCCACGTGTCGCCAGCAGGCCCACTT
ATCTGTCCTTGGGTGGAAGGCAAGATGCGGAGTACCAGTACTACTGCTCGGCTCCAGTAAAAAGTAAAAAAAGGAAATCGGGTACCAGAACAAGTTGTAC
TACTACAGTCATGGCGCGCACAGGCACAGCAAACGGCGCGACTCGCGCCATTTTTTGATTCTCTGCATGGGCAGGCGGTAGGCGCTGCTAGTACCGGGCG
AGCGCGCGGCGGAGCACCTGGGCGAGGAGGCCTGGGGCGCTGAGGTGCGGGAGGTGGCCCTCGGTCTGGAGGAACTCGACGGTGGTGCGGCCGCCGAGGT
GGTCCCTGAGGTAGGCGGCGACGGAGGCCGGGACGGAGACGTCGCGGGTGGTCTGCACCACCACGCAGGGGGAGCGCACCATGCCCAGCACGCCGCGGAG
ACGGAGTGTCCGACGAAGGCGCATCGCGGGATGCGGAGCGCGTCGAGTATGGCGAGGAGGTCGTCGACGTACGAGTCGAGCGTGTCGTAGCGTCGGAAGT
CGAAGTGCTCCGGGTTGACGCTGCCGGCGCAGACGAGGTCGTAGAGCACCACGCGGTGGTCGCGGGTGAGGTACGGGAGCACGCGGCTCCACGCCGACTG
GTCCGTCCCGAACCCGTGGGACAGCACCACGACGCGGTCGCCGGTGCCCACGACCCGCACGTTGAGGATCTGCAGCAGCTTGGCGCCGCTCGGCCCGCCG
GCGCCGGCGCCGCTGCCCGCCGCCGCCGCGCCGCCCCCGACCATCGCGGCGTCGGAGCTGCTGGACGACGCCGGCGCCGCGGAGCTGCCGCTGCCGCTGG
TGGGGCTTGGTGGGTGCGTGGACCGAAGCATGAGTGAGACCAGGACGGGTGGG