Detailed information on CNT30361762


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678205Sorghum bicolorSetaria viridis32.3240.7795.28106forward
CNT30404513Sorghum bicolorBeta vulgaris34.7628.7985.09114forward
CNT30250827Sorghum bicolorAvena sativa26.2224.7888.3786forward
CNT3061548Sorghum bicolorArabidopsis lyrata24.399.7787.580forward
CNT3016329Sorghum bicolorZea mays41.7727.3597.08137forward
CNT30713351Sorghum bicolorMalus domestica golden24.718.3385.1981forward
CNT30679535Sorghum bicolorTriticum urartu22.5628.5790.5474forward
CNT3034209Sorghum bicolorTheobroma cacao30.1836.6781.8299forward
CNT30498788Sorghum bicolorDigitaria exilis21.0429.4994.269reverse complement

Expression of CNT30361762

Peptides detected in this lncRNA

>peptide 1 (44 aa)
WSSPGYIWFLPARRHPWCRKCSGTAHRCGHGSSGRRSSGCARSG*

>peptide 2 (62 aa)
MCPFRVTQDISLSKVTMRGEDNNIEHHGDRSKELLQGGRIWGLKKVQEEAAQNTVTGSFPHC*

>peptide 3 (48 aa)
GAALVIYGFYLHEGTLGVANVAVQLTVADTVHLGGDPADVPVQGNPRH*

>peptide 4 (43 aa)
MGIVPRNFSRVDGSGASRRSKRRRLRTRSPAASPIASLFLGPQA

Sequence

>CNT30361762
TGGAGCAGCCCTGGTTATATATGGTTTTTACCTGCACGAAGGCACCCTTGGTGTCGCAAATGTAGCGGTACAGCTCACCGTTGCGGACACGGTTCATCTG
GGCGGAGATCCAGCGGATGTGCCCGTTCAGGGTAACCCAAGACATTAGCTTGAGCAAAGTAACCATGAGGGGAGAGGATAACAACATTGAACACCATGGG
GATCGTTCCAAGGAACTTCTCCAGGGTGGACGGATCTGGGGCCTCAAGAAGGTCCAAGAGGAGGCGGCTCAGAACACGGTCACCGGCAGCTTCCCCCATT
GCTAGTCTCTTCTTGGGTCCTCAAGCCT