Detailed information on CNT30361727


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCSAT000472, E-value = 7e-63

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693553Sorghum bicolorOryza sativa94.4120.495.12287forward
CNT30730376Sorghum bicolorCorchorus capsularis64.4749.1287.76196forward
CNT30300556Sorghum bicolorTriticum aestivum94.4116.7995.12287forward
CNT30539896Sorghum bicolorBrassica napus93.0916.2487.99283forward
CNT30441515Sorghum bicolorAegilops tauschii94.4144.6395.12287forward
CNT30425595Sorghum bicolorPapaver somniferum92.1147.8689.64280forward
CNT30109402Sorghum bicolorOryza longistaminata94.4121.7995.47287forward
CNT30100129Sorghum bicolorOryza rufipogon94.4127.3395.47287forward
CNT30557406Sorghum bicolorPanicum hallii94.4168.0196.52287forward

Expression of CNT30361727

Peptides detected in this lncRNA

>peptide 1 (46 aa)
CKEQVPNHDQFPFQSLLQQLGLFLHATNGPQKRRILEQNGRSLTNF*

>peptide 2 (35 aa)
VKNRFQITINSLFKACCSSSGSSCMPQMAHKKEES*

Sequence

>CNT30361727
TGTAAAGAACAGGTTCCAAATCACGATCAATTCCCTTTTCAAAGCCTGCTGCAGCAGCTCGGGCTCTTCCTGCATGCCACAAATGGCCCACAAAAAAGAA
GAATCCTAGAACAAAATGGGAGGTCGCTAACCAACTTCTAGAAGAGACATAATTAACTGTATTGATCTCGGTAGCTACGCCACCCACGGAAATTAAAGAG
CCTAAAGGAGCATGGGTCATATATTCTGCTGAACGTCGTTCTTGCCAAGGTTGGATATCTTTTTTCAACCTACTCAAGTCCAAACCGGACGAGCCCCATA
GAGG