Detailed information on CNT30361636


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677855Sorghum bicolorSetaria viridis28.2620.3194.23104forward
CNT30522214Sorghum bicolorSetaria italica22.5510.695.1883forward
CNT30530439Sorghum bicolorEucalyptus grandis20.926.6584.4277forward
CNT30305412Sorghum bicolorTriticum aestivum18.7523.2394.269forward
CNT30588421Sorghum bicolorMusa acuminata23.9131.2186.3688forward
CNT30662767Sorghum bicolorTriticum dicoccoides2544.2392.3992forward
CNT30445673Sorghum bicolorSaccharum spontaneum29.6240.8297.25109forward
CNT3015514Sorghum bicolorZea mays22.2816.8493.982forward
CNT3067157Sorghum bicolorLeersia perrieri2519.8788.0492forward

Expression of CNT30361636

Peptides detected in this lncRNA

>peptide 1 (44 aa)
GAPHPTSHTPPTIPASLSTDSTQTTNNSDQTTKTNTRINDGTRP*

>peptide 2 (53 aa)
EHHTRLHTHHPPSQHPSQPTQHKLLTIQIRLLKPTPGSMMEQDLDDKAITILD*

Sequence

>CNT30361636
GGGAGCACCACACCCGACTTCACACACACCACCCACCATCCCAGCATCCCTCTCAACCGACTCAACACAAACTACTAACAATTCAGATCAGACTACTAAA
ACCAACACCCGGATCAATGATGGAACAAGACCTTGATGACAAGGCAATAACAATTCTTGATTGAAGGGAATAGCAGCAACGAACGCCCGTCGCCTAGGAA
AAAGCAGACTCTTTTTTCGCCTCCTGGTCAGGGGAAGGAAACCCAGGGAAAAGACACAACTCCAAGTACCGCCGGGTCTCGCGCCTCTCCAGGTTGGACA
CGTACTTCCAGAAACCATACACGCCCGTCAGGGTCATCAGCCTCTCCGAGTACAGCTTCCAGGTGTAT