Detailed information on CNT30361575


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QLY4|METE2_ORYSJ, E-value = 9e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672500Sorghum bicolorSetaria viridis24.7349.0789.24158forward
CNT30534084Sorghum bicolorEucalyptus grandis21.4467.1683.21137forward
CNT30403132Sorghum bicolorBeta vulgaris21.4442.6882.48137forward
CNT30555769Sorghum bicolorOryza glaberrima44.4466.8290.85284forward
CNT30440702Sorghum bicolorAegilops tauschii40.5378.4890.35259forward
CNT30137932Sorghum bicolorLolium perenne21.7555.1685.61139forward
CNT30689646Sorghum bicolorTriticum urartu32.7172.5789.95209forward
CNT30721908Sorghum bicolorTriticum spelta40.5381.790.35259forward
CNT30597233Sorghum bicolorOryza meridionalis44.4477.1790.49284forward
CNT30323045Sorghum bicolorAsparagus officinalis37.2549.6983.61238forward
CNT30104304Sorghum bicolorOryza rufipogon44.4480.2390.49284forward
CNT30578494Sorghum bicolorOryza barthii44.448090.85284forward
CNT30118019Sorghum bicolorOryza nivara43.9779.8390.04281forward
CNT30604869Sorghum bicolorOryza punctata24.5760.1590.45157forward
CNT30333332Sorghum bicolorCynara cardunculus26.1331.183.23167forward

Expression of CNT30361575

Peptides detected in this lncRNA

>peptide 1 (68 aa)
LNTSSLKILNLLFDCKSYLVACLKPVRQQNIIYHILFVTQLQMREQKRNTVFQTVSKHIEADWKMEQT*

>peptide 2 (57 aa)
MYLIPASDICFQMLDLRSVATFSKSSALLFPSQKDSKANLSSLLGPMRGYPTIWDAIF

>peptide 3 (35 aa)
MSQTCTPTKHNLSYSFCHPVTDEGAEAQHSVSNCF*

>peptide 4 (44 aa)
MGAQANLTSSPRVALWDSAKHGRGIKNLVVVREGVAGNVLDPSF*

Sequence

>CNT30361575
ACCTGAATACCAGCAGCCTCAAGATCCTCAACCTCCTTTTTGATTGCAAGAGCTATTTGGTAGCATGTCTCAAACCTGTACGCCAACAAAACATAATTTA
TCATATTCTTTTTGTCACCCAGTTACAGATGAGGGAGCAGAAGCGCAACACAGTGTTTCAAACTGTTTCTAAGCATATTGAAGCAGATTGGAAAATGGAA
CAGACCTAGGCTGGTCGTTCCTGACAAATGACCAGTTGAGGATTGTGACTGGACCAGTCAACATTCCCTTCATGGGACGGGCGGTCATGCTTTGTGCCGT
CTTGGACCAGAACACAGTCATGGGGTTCGGCCGGCTGACATCACCATAGATAATGGGTGCTCAAGCCAATCTCACCTCCAGTCCAAGAGTAGCGCTCTGG
GACAGCGCCAAGCATGGCCGTGGTATCAAGAACCTGGTCGTAGTACGAGAAGGTGTTGCTGGGAATGTACTTGATCCCAGCTTCTGACATTTGCTTCCAG
ATGCTAGACCTGAGGTCAGTGGCAACTTTCTCCAAATCCTCGGCGCTGCTCTTCCCATCCCAGAAAGACTCCAAGGCAAACTTGAGCTCCCTCTTGGGGC
CCATGCGAGGGTATCCAACAATATGGGACGCCATCTTTC