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Detailed information on CNT30361520


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 2e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Sorghum bicolorSetaria viridis27.0528.8695.14185forward
CNT30532843Sorghum bicolorEucalyptus grandis31.4329.3784.65215forward
CNT30316236Sorghum bicolorCorylus avellana28.842.9283.76197forward
CNT30547527Sorghum bicolorIpomoea triloba18.1328.6484.68124forward
CNT30512951Sorghum bicolorJuglans regia45.7640.1381.47313forward
CNT3019597Sorghum bicolorCitrullus lanatus44.8841.0483.71307forward
CNT3071370Sorghum bicolorQuercus suber14.6240.6588100forward
CNT30405825Sorghum bicolorBeta vulgaris14.7744.189.11101forward
CNT30711584Sorghum bicolorGlycine max36.435.3783.13249forward
CNT3045373Sorghum bicolorPrunus dulcis45.6139.883.33312forward
CNT30191206Sorghum bicolorSecale cereale46.225.8283.86316forward
CNT30300473Sorghum bicolorTriticum aestivum46.232.6484.81316forward
CNT30561658Sorghum bicolorActinidia chinensis28.0716.4182.29192forward
CNT3085191Sorghum bicolorVigna radiata39.6237.884.87271forward
CNT30510505Sorghum bicolorSolanum lycopersicum41.5226.1582.39284forward
CNT30552635Sorghum bicolorOryza glaberrima37.1324.4788.19254forward
CNT30143941Sorghum bicolorMedicago truncatula38.4558.7185.17263forward
CNT30441158Sorghum bicolorAegilops tauschii44.8840.4584.69307forward
CNT30313706Sorghum bicolorCamelina sativa25.4453.3783.33174forward
CNT3059659Sorghum bicolorArabidopsis lyrata27.1942.8682.8186forward
CNT30135610Sorghum bicolorLolium perenne31.8725.7783.94218forward
CNT3014085Sorghum bicolorZea mays35.9640.3395.12246forward
CNT30203835Sorghum bicolorHelianthus annuus27.9239.7981.15191forward
CNT30722731Sorghum bicolorTriticum spelta33.0444.2383.63226forward
CNT30345702Sorghum bicolorEragrostis tef44.1537.3889.74302forward
CNT30596064Sorghum bicolorOryza meridionalis37.1349.6187.8254forward
CNT30369654Sorghum bicolorOryza glumipatula33.1925.887.67227forward
CNT30153558Sorghum bicolorPrunus persica20.4741.4285.71140forward
CNT30107537Sorghum bicolorOryza longistaminata37.1327.6487.8254forward
CNT30332479Sorghum bicolorDioscorea rotundata18.8645.5886.82129forward
CNT30100253Sorghum bicolorOryza rufipogon37.1323.0588.19254forward
CNT30575129Sorghum bicolorOryza barthii37.1331.288.19254forward
CNT30116094Sorghum bicolorOryza nivara37.1328.8688.19254forward
CNT3050899Sorghum bicolorCucumis sativus23.2563.183.02159forward

Expression of CNT30361520

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MVKDTLGERLTRGCSPQLAGEPKRLDDREVSLDVVERGTRPLHLLKHMPSLLVQNTVDTTKFDCNTTLCFICTSISHANITSNFLGNNPSSCHKG

Sequence

>CNT30361520
AGTGGATATAAGAAATACACCCGGAAAATAAGTATATAACCAATTACTAAACCAAAGATACCACCTCTGTTTCATCTGCTACATCAAAACGGATATCAAA
ATAGTGTCTCAGGCTCTCAGCACAGATTGACAAACTACATGATGACCAATATAGTTCAGAGACAGGTACATTAACTAAAACGAGAGAAAATATTCAAGTC
GTTCCCAATACAATAGACAAATTGACGATTAAACCAGCAATAGTAACAGTAGAACAAACAACCAAAAATTTAGAGCTTGTCCTCAAACTCAGAGAGAGGG
GTCATCTGTTCCTTGAGACCCTTCCTCTTGCGGATATCCAGCACCAGCTGAGCAGCCTGGGAGCCAGCCTCCAAAGGATCAGAGCCCATCATGTCCCAAT
GGTCAAAGACACACTGGGGGAACGCCTGACCAGAGGTTGCAGCCCTCAGTTGGCTGGAGAACCCAAACGACTCGATGACAGGGAGGTAAGCCTTGATGTT
GTAGAGCGGGGTACCCGGCCTCTGCATCTCCTCAAACACATGCCCTCTCTTCTGGTTCAGAACACCGTAGATACCACCAAATTTGATTGTAATACCACGC
TCTGCTTCATCTGCACGAGTATCAGTCATGCGAACATCACCAGCAACTTCCTGGGCAATAATCCCAGCAGCTGCCACAAGGGAA