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Detailed information on CNT3036150


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Cucumis meloOryza sativa26.4115.5385.3989forward
CNT30678154Cucumis meloSetaria viridis39.7621.9383.58134forward
CNT30522155Cucumis meloSetaria italica32.3412.483.49109forward
CNT30641079Cucumis meloNymphaea colorata29.0813.1986.7398forward
CNT30534291Cucumis meloEucalyptus grandis36.219.1584.43122forward
CNT30376427Cucumis meloArabidopsis thaliana37.9820.7589.84128forward
CNT30728063Cucumis meloCorchorus capsularis43.3216.8286.99146forward
CNT30381383Cucumis meloManihot esculenta43.628.3785.71147forward
CNT30196370Cucumis meloPisum sativum40.6514.3885.4137forward
CNT30486254Cucumis meloOlea europaea37.9833.4284.38128forward
CNT30710178Cucumis meloGlycine max29.9723.8289.11101forward
CNT3092760Cucumis meloSolanum tuberosum28.4913.8789.5896forward
CNT30223001Cucumis meloHordeum vulgare21.9626.6289.1974forward
CNT30390564Cucumis meloTriticum turgidum39.7644.0885.82134forward
CNT30567082Cucumis meloActinidia chinensis35.0126.8287.29118forward
CNT30586804Cucumis meloMusa acuminata31.1613.685.71105forward
CNT30511260Cucumis meloSolanum lycopersicum39.7633.2588.06134forward
CNT30553024Cucumis meloOryza glaberrima26.416.2385.3989forward
CNT30253208Cucumis meloAvena sativa33.539.484.07113forward
CNT30261872Cucumis meloBrassica rapa29.0811.0788.7898forward
CNT30614070Cucumis meloArabis alpina33.538.1891.15113forward
CNT3011897Cucumis meloZea mays40.6541.1486.13137forward
CNT3041960Cucumis meloChlamydomonas reinhardtii39.1738.7182.58132forward
CNT30203517Cucumis meloHelianthus annuus36.210.8590.16122forward
CNT30627268Cucumis meloDaucus carota34.129.2988.7115forward
CNT30681848Cucumis meloTriticum urartu24.639.3889.1683forward
CNT30341625Cucumis meloEragrostis tef30.8610.6785.58104forward
CNT30363168Cucumis meloSorghum bicolor34.4211.7687.07116forward
CNT30595966Cucumis meloOryza meridionalis26.4114.5285.3989forward
CNT30369370Cucumis meloOryza glumipatula33.5317.0484.96113forward
CNT30433292Cucumis meloPapaver somniferum37.0911.9387.2125forward
CNT3024644Cucumis meloPopulus trichocarpa29.974.9488.12101forward
CNT30322043Cucumis meloAsparagus officinalis35.3114.2283.19119forward
CNT30119164Cucumis meloCitrus clementina20.1814.5985.2968forward
CNT30332119Cucumis meloDioscorea rotundata29.0815.4384.6998forward
CNT30150001Cucumis meloBrachypodium distachyon26.4128.1688.7689forward
CNT3099978Cucumis meloOryza rufipogon25.5210.6286.0586forward
CNT30575530Cucumis meloOryza barthii26.419.8685.3989forward
CNT30116105Cucumis meloOryza nivara33.5315.3184.96113forward
CNT30602702Cucumis meloGaldieria sulphuraria44.2116.5481.21149forward
CNT3049477Cucumis meloCucumis sativus42.4350.3586.01143forward

Expression of CNT3036150

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MLLSASVNSISSIPSPVYQCKKAFRLNMAVNC

>peptide 2 (38 aa)
GIRTKFILCRLKIQLSEDKISSKVKHIIKDNRKIDKST*

Sequence

>CNT3036150
TGGGATTCGAACAAAATTCATATTATGTAGGTTAAAAATTCAACTGTCCGAAGACAAAATCAGTTCAAAAGTCAAGCACATAATAAAAGACAACAGAAAA
ATAGACAAATCCACATGACTGGCAACAGATAGTTGCAAGAGTTGCAACATATTATCTTCAACGTCATCATCTTCTTCTTCGTAATACTCATCTTCGGCTG
TGGCGTCTTGGTACTGCTGGTACTCAGAAACAAGATCATTCATGTTACTTTCAGCTTCAGTGAACTCCATCTCGTCCATTCCTTCTCCTGTGTACCAATG
CAAGAAAGCTTTTCGTCTAAACATGGCAGTGAATTGC