Detailed information on CNT30361473


BLAST search results

BLAST vs Swiss-Prot:
sp|P06353|H33_HORVU, E-value = 6e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677790Sorghum bicolorSetaria viridis20.8227.3297.32112forward
CNT30376827Sorghum bicolorArabidopsis thaliana22.6851.6989.34122forward
CNT3069232Sorghum bicolorQuercus suber20.6323.4285.59111forward
CNT30628401Sorghum bicolorVigna unguiculata21.1933.9385.96114forward
CNT30200079Sorghum bicolorPisum sativum19.8926.6287.85107forward
CNT30712448Sorghum bicolorGlycine max26.0232.9485140forward
CNT3090157Sorghum bicolorSolanum tuberosum23.2319.3884.8125forward
CNT30125320Sorghum bicolorPhyscomitrium patens22.8612.6484.55123forward
CNT30221211Sorghum bicolorHordeum vulgare27.712.9592.62149forward
CNT30508643Sorghum bicolorSolanum lycopersicum23.2316.2584125forward
CNT30447268Sorghum bicolorSaccharum spontaneum55.0275.995.95296forward
CNT30133877Sorghum bicolorLolium perenne22.6857.2887.7122forward
CNT30605939Sorghum bicolorGossypium raimondii23.2322.6985.6125forward
CNT30686633Sorghum bicolorTriticum urartu17.133.2186.9692reverse complement
CNT30154413Sorghum bicolorPrunus persica22.8631.7887.8123forward
CNT30328607Sorghum bicolorAsparagus officinalis23.7922.3884.38128forward
CNT30329187Sorghum bicolorDioscorea rotundata21.7530.1582.05117forward
CNT30114434Sorghum bicolorEutrema salsugineum21.5629.1587.93116forward

Expression of CNT30361473

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MTRQFKHSTLVITPAKVAATHSAAVEKLMIHKTNPTHMSLQRHQIKFIATTQDFIFVTMI*

>peptide 2 (46 aa)
MSLGMMVTRLAWMAHRLVSSNSPTRYASAASWRASTAWLLHSSSGGG

>peptide 3 (58 aa)
GLKKNCNDAQIYTHCNTILDINEQISHSNEAQDPAAQTTLLVSAYIAYTSQTVSALHD*

>peptide 4 (35 aa)
MDGAQVGVLKQPNKVCLSSLLEGKHGMASSLLQWWG

>peptide 5 (40 aa)
GSKKIATMHKYTLTVTQFLTLTNKSATAMRRKIQQRRQHY*

Sequence

>CNT30361473
GGGCTCAAAAAAAATTGCAACGATGCACAAATATACACTCACTGTAACACAATTCTTGACATTAACGAACAAATCAGCCACAGCAATGAGGCGCAAGATC
CAGCAGCGCAGACAACACTACTAGTCAGTGCCTACATCGCATACACGTCACAGACTGTCAGCGCATTACATGACTAGACAATTTAAGCATTCGACACTAG
TAATAACACCAGCAAAGGTAGCAGCAACACATAGTGCGGCAGTAGAGAAACTTATGATCCACAAAACAAACCCTACTCATATGTCCTTACAACGGCACCA
GATTAAATTCATTGCTACGACACAAGACTTCATTTTTGTCACAATGATTTGAGGGGGGGATTAGGCCCTCTCGCCACGGATCCTCCTTGCCAGCTGAATG
TCCTTGGGCATGATGGTCACACGCTTAGCATGGATGGCGCACAGGTTGGTGTCCTCAAACAGCCCAACAAGGTATGCCTCAGCAGCCTCCTGGAGGGCAA
GCACGGCATGGCTTCTTCACTCCTCCAGTGGTGGGGGC