Detailed information on CNT30361420


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H7U1|TBB2_ORYSJ, E-value = 2e-74

BLAST vs NONCODE:
NONBNAT004015, E-value = 3e-50

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522155Sorghum bicolorSetaria italica57.1827.6597.12243forward
CNT30291318Sorghum bicolorTriticum aestivum46.3559.1688.83197forward
CNT30586804Sorghum bicolorMusa acuminata41.4122.891.48176forward
CNT30553024Sorghum bicolorOryza glaberrima5215.4895.02221forward
CNT30370114Sorghum bicolorOryza glumipatula5226.9895.02221forward
CNT3057379Sorghum bicolorAmborella trichopoda26.3540.1489.29112forward
CNT3099978Sorghum bicolorOryza rufipogon54.1228.493.48230forward
CNT30575530Sorghum bicolorOryza barthii5224.4795.02221forward
CNT30116105Sorghum bicolorOryza nivara40.9423.5897.13174forward

Expression of CNT30361420

Peptides detected in this lncRNA

>peptide 1 (83 aa)
EARGRDVTHGGLDVVGDPLHEVGGVLVLHVEHLLVHLLGAHLAAEHGGRREVATVARVGGAHHVLGVPHLLGELRDRQGAGTG*

>peptide 2 (77 aa)
MFLASHICWVSSGTVRARERDEVDGQLAEVGVELAREAEAAGDAAHGGGDEVVEVAEARGGELERAEADVVERLVVEH

>peptide 3 (50 aa)
MRLTASLRRSELSWPGKRRQQVTPLMVAEMRWLRSPKLGVVSLSVRKQMS*

Sequence

>CNT30361420
TTGAGGCCCGTGGGCGGGATGTCACACACGGTGGACTTGACGTTGTTGGGGATCCACTCCACGAAGTAGGAGGAGTTCTTGTTCTGCACGTTGAGCATCT
GCTCGTCCACCTCCTTGGTGCTCATCTTGCCGCGGAACATGGCGGACGCCGTGAGGTAGCGACCGTGGCGCGGGTCGGCGGCGCACATCATGTTCTTGGC
GTCCCACATCTGCTGGGTGAGCTCCGGGACCGTCAGGGCGCGGGAACGGGATGAGGTTGACGGCCAGCTTGCGGAGGTCGGAGTTGAGCTGGCCCGGGAA
GCGGAGGCAGCAGGTGACGCCGCTCATGGTGGCGGAGATGAGGTGGTTGAGGTCGCCGAAGCTCGGGGTGGTGAGCTTGAGCGTGCGGAAGCAGATGTCG
TAGAGCGCCTCGTTGTCGAGCACCA