Detailed information on CNT30361411


BLAST search results

BLAST vs Swiss-Prot:
sp|O22347|TBA1_ELEIN, E-value = 1e-92

BLAST vs NONCODE:
NONGMAT000220, E-value = 1e-85

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223592Sorghum bicolorHordeum vulgare19.4746.6789.01182forward
CNT30721351Sorghum bicolorTriticum spelta36.1551.0684.02338forward

Expression of CNT30361411

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MKWILGLGAQCQGSGGRCHRWPHCQGGQRHQCARGESGWTGHCCMAQPLR*

>peptide 2 (57 aa)
MLPSASLTEEGVESIITSPNGLVTRHLAISLNRIQTAVLFMQIAKGDHIIQMQSIKMY

>peptide 3 (36 aa)
MRQQAMYLPWRGSHLAIMEDGSKALLVISATDSCSW*

>peptide 4 (44 aa)
MRSRHRSTNTARGTCFPAPVSLKKVLKASSPPPTVLSPGIWPSA*

>peptide 5 (33 aa)
MASLSRRTATSVCSRREWVDRTLLYGSTTEVET*

>peptide 6 (60 aa)
MARITFGHHGGWLKGTIGDFSNGQLLVVGLLSRDHRSVGGKHEVDPRVGRSMSRERRQMS*

Sequence

>CNT30361411
GACAAACAAGATAGTACGAGCCACTCAGGGCAGATCACGGGATAATTGCAGCAAATAGGCCCGACGCTGTAGAACCAGAAAGCTTCTAGTACTCGTCGCC
CTCGTCACCATCCTCACCCTCGTCGTACTCAGCGCCAACCTCCTCATAGTCCTTCTCAAGCGCAGCCAGGTCCTCACGGGCCTCAGAGAACTCACCCTCC
TCCATACCCTCACCAACGTACCAGTGCACGAAGGCACGCTTGGCGTACATGAGGCAGCAGGCCATGTACTTGCCATGGCGAGGATCACATTTGGCCATCA
TGGAGGATGGCTCAAAGGCACTATTGGTGATTTCAGCAACGGACAGCTGCTCGTGGTAGGCCTTCTCAGCCGAGATCACAGGAGCGTAGGAGGAAAGCAT
GAAGTGGATCCTCGGGTTGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCAAGGAGGACAGCGACATCAGTGTGCTCGA
GGAGAGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACCACTGAGGTAGAGACCTGAGGGGATGGGTACACAGTGAACCCAAGCTTGGACTTCTTGCC
ATAATCAACAGACAGACGCTCCAAGAGGAGGGAACCAAGTCCAGAGCCCGTTCCTCCACCAACAGCATTGAAGACAAGGAAACCCTGGAGACCAGTGCAG
TTGTCTGCAAGCTTCCTGATGCGATCAAGGCACAGGTCAACAAACACAGCACGGGGGACATGCTTCCCAGCGCCAGTCTCACTGAAGAAGGTGTTGAAAG
CATCATCACCTCCCCCAACGGTCTTGTCACCAGGCATCTGGCCATCAGCCTGAATAGAATACAAACAGCAGTGTTATTTATGCAAATTGCAAAAGGAGAC
CATATAATTCAAATGCAGTCGATTAAAATGTATCA