Detailed information on CNT303614


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F9I1|CLPC1_ORYSJ, E-value = 4e-118

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30709232Zea maysGlycine max56.1442.982.81320forward
CNT30561426Zea maysActinidia chinensis35.9627.7880205forward
CNT30144776Zea maysMedicago truncatula34.0414.7882.99194forward
CNT30254596Zea maysAvena sativa21.759.3586.29124forward
CNT30311864Zea maysCamelina sativa29.6534.9282.84169forward
CNT3062430Zea maysArabidopsis lyrata29.6514.6682.25169forward
CNT30207996Zea maysHelianthus annuus29.8238.281.18170forward
CNT3053264Zea maysAmborella trichopoda31.428.5987.15179forward
CNT30328300Zea maysAsparagus officinalis21.5841.2883.74123forward
CNT30116632Zea maysOryza nivara61.7591.9183.81352forward

Expression of CNT303614

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MIRVCSVSSIFRRRSDSSDDTFSTGIPVQEETIC*

>peptide 2 (35 aa)
FSMTLLPTLDVMINSVFLKSTVRPLLSVNRPSSKI*

>peptide 3 (29 aa)
MPLHELTHVKPDHSLLRAKVVGRQGLCKL*

>peptide 4 (36 aa)
MLKTSGCAFSISSKRTTVYGRRRTASVSWPPSVYPT*

Sequence

>CNT303614
CCTTCTCAATGACACTGCTCCCGACATTAGATGTCATGATCAATAGTGTGTTCTTGAAATCAACAGTGCGCCCCTTGCTATCAGTTAACCGCCCATCTTC
TAAGATCTGAAGCATCATGTTGAAAACATCTGGATGTGCCTTCTCAATCTCATCAAAGAGAACAACTGTGTACGGGCGGCGACGGACTGCTTCAGTTAGT
TGGCCTCCCTCAGTGTACCCAACATAACCTGGAGGTGATCCAATGAGTTTGGAGACAGTATGCCGCTCCATGAACTCACTCATGTCAAGCCTGATCATAG
CCTCCTCCGAGCCAAAGTAGTAGGCCGCCAGGGCCTTTGCAAGCTCTGATTTGCCAACACGAGCACGGCGGATAGCACGGCTAATAGCTTTGACAGCCTC
ATCCTGTCCAATGATACGTGTATGCAGCGTCTCTTCCATCTTTAGGAGGCGGTCAGACTCATCCGATGACACTTTCTCCACAGGAATTCCAGTCCAAGAG
GAGACAATATGTTGAATGTCTGCCTCAGTAACAAGCGGACCGACTTCACCAGATTCAGTCTCTGCTTTAA