Detailed information on CNT30361378


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y0E8|NRX11_ORYSJ, E-value = 5e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691748Sorghum bicolorOryza sativa29.7514.8484.87119forward
CNT30252286Sorghum bicolorAvena sativa51.2546.786.34205forward
CNT30132362Sorghum bicolorLolium perenne51.2519.4583.9205forward

Expression of CNT30361378

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MTSKLLPCSASSLYTSISLGVNLLHGGHHEAEK*

Sequence

>CNT30361378
AGGTCATGAGATGTTGCATCGAGCAGTTACCTTGTCTCCCTTGTTTGAAATGAGATAGTCTCGAGTAGATGTGCCAAGCACGCTTTGAATAGTTTGATTC
TCCTTTTCTGCCTTTTCCTGTTCCTTCAGTTCATTGATCCTATCTGGTGTGGGATACCAGAGACCTTGAACCGGGCATCAAGGGCCGCACGGCCTTCGGT
GTCAGAAAAAGGGACAGCCAACCATGGCATCTTTGCAAAGTATTCATTGAATCCTTCCTCATTCTGATCAGCCGAAGCAAAGATGACCTCGAAGCTCTTG
CCCTGTTCAGCCAGTTCTTTGTACACTTCAATAAGCTTGGGCGTGAACCTCCTGCATGGCGGGCACCATGAGGCCGAGAAGTAGATGGCCACAGGGCTCG