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Detailed information on CNT30361377


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N4|40G3_ORYSJ, E-value = 4e-90

BLAST vs NONCODE:
NONZMAT000139, E-value = 2e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692288Sorghum bicolorOryza sativa20.8747.5791.06235forward
CNT30671534Sorghum bicolorSetaria viridis31.4445.9789.27354forward
CNT30520246Sorghum bicolorSetaria italica32.2438.6287.33363forward
CNT30180108Sorghum bicolorSecale cereale18.3894.5290.34207forward
CNT30289434Sorghum bicolorTriticum aestivum19.2737.4891.71217forward
CNT30221546Sorghum bicolorHordeum vulgare17.4185.9693.37196forward
CNT30392320Sorghum bicolorTriticum turgidum15.818989.33178forward
CNT30554471Sorghum bicolorOryza glaberrima19.5439.9391.36220forward
CNT30439204Sorghum bicolorAegilops tauschii18.8370.989.15212forward
CNT30251924Sorghum bicolorAvena sativa30.6463.4289.86345forward
CNT30658643Sorghum bicolorTriticum dicoccoides19.1848.7687.96216forward
CNT30450022Sorghum bicolorSaccharum spontaneum33.6636.6589.71379forward
CNT30681546Sorghum bicolorTriticum urartu16.6185.3992.51187forward
CNT30721558Sorghum bicolorTriticum spelta19.5498.2187.73220forward
CNT30341745Sorghum bicolorEragrostis tef16.0736.2791.71181forward
CNT30596537Sorghum bicolorOryza meridionalis16.6133.6993.58187forward
CNT30370727Sorghum bicolorOryza glumipatula17.8538.4393.53201forward
CNT30104991Sorghum bicolorOryza longistaminata19.4592.4189.04219forward
CNT30148227Sorghum bicolorBrachypodium distachyon15.1967.8690.06171forward
CNT30102506Sorghum bicolorOryza rufipogon17.8531.2190.05201forward
CNT30577068Sorghum bicolorOryza barthii18.3844.3393.72207forward
CNT30496422Sorghum bicolorDigitaria exilis18.9234.5288.73213forward
CNT30117229Sorghum bicolorOryza nivara18.4735.4991.83208forward
CNT30593977Sorghum bicolorEragrostis curvula19.7210089.64222forward
CNT30604388Sorghum bicolorOryza punctata12.5242.4794.33141forward
CNT30556802Sorghum bicolorPanicum hallii25.5832.5889.93288forward
CNT30551356Sorghum bicolorOryza brachyantha12.3440.1794.24139forward

Expression of CNT30361377

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MRTVGSPWPYGALPNIFSRSTLLGRGFWGGLGGSNSVEDLGRGD

>peptide 2 (60 aa)
MASPVTLFTSANAGYPSSSLMRLLCRMSLTQCWYSSRGFVGARHTLPLRTVTLNPSSALQ*

Sequence

>CNT30361377
GGTCTGAAAACTCTCTCTGCATAACAAGCTTCAGATGGGGTAAGGCTTTGTGAGATAAGCTCACCGAGGAAGTACCCCTCTCTCACGGAAGCAGGACTGG
CTCCGAGGACACACGACTGAACACACACAAAGACACACCATCACCACGGATCGATCGCACACCAGCTTTATTCTAACAACACGGCAGCAGCAGCAGCTGC
TGACCACAGGTGGCTGTGCTCTCCAACTCCATCTCCAGATCTTGGGTGATGACCAATGCAGCCCCAGCACCGCACATTTCTGCAGACGCAAGCAACATTA
ACACGTCATTAATCTTCTTTTGACAGAAATGTTAGACACATTATTAATTCAAAAAAAGGTGGACTAACAATAGTAGCGAGATGAGCTATCCGTTTCTACC
GACAATCACTTTATCTATGAAAGCTTCTAGTGCGAGTAGGTAAGATGTGCTGATTTTTCTATCCGAAATCAAGATTCTGGAGGTGGGGAAAAAAAAAGCA
GCGGCAGCAAGTGAAAAGTGTCGTGCATCAGCGTGAGGTGAGGCTTTGACTTACACCAGGGGACGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTT
CCAGAGCACGACGGCGGTGCCGTCGCGCACCCCGCCGTGGTCCTTGTCGCCGTGGAAGGCGTCGAAGTTGAGGTAGATGTTGTTCACCATGCGGATGCAG
CGGAACCCGTGGCCGACGTCGCGGCTCTCGGTCCACAGCACCGACTCGTCCTGGTAGTTTGGGTTGTACGGCACCAGCTTCACCGGGTGGCCCTCGCCCT
GCGAGTGCTTGATGGCCTCGCCGGTGACCCTGTTCACGAGCGCGAACGCCGGGTACCCTTCCTCGTCCTTGATGCGGTTGCTGTGCCGCATGTCCTTGAC
CCAGTGCTGGTACTCGTCGCGCGGGTTCGTCGGCGCCAGGCACACGCTGCCGTTGCGGACGGTCACGCTGAACCCGTCGTCCGCCTTGCAGTAGATGCGG
ACCGTCGGCTCGCCGTGGCCGTACGGCGCGTTGCCGAACATCTTCTCGCGCTCTACTCTCCTTGGTCGGGGGTTTTGGGGAGGGTTGGGTGGATCGAACA
GTGTGGAGGATTTGGGACGGGGCGAT