Detailed information on CNT30361348


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 5e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547410Sorghum bicolorIpomoea triloba42.0241.6282.81221forward
CNT3071371Sorghum bicolorQuercus suber47.1586.4186.29248forward
CNT30405832Sorghum bicolorBeta vulgaris45.6329.9385.83240forward
CNT30192963Sorghum bicolorSecale cereale49.4348.6988.46260forward
CNT30543621Sorghum bicolorBrassica napus27.7657.0386.3146forward
CNT30309902Sorghum bicolorCamelina sativa87.0740.3985.37458forward
CNT30263621Sorghum bicolorBrassica rapa69.3930.8587.4365forward
CNT30612508Sorghum bicolorArabis alpina89.3518.5284.89470forward
CNT301916Sorghum bicolorZea mays75.197.0595.44395forward
CNT30212259Sorghum bicolorHelianthus annuus84.9867.0278.3447forward
CNT30716253Sorghum bicolorMalus domestica golden86.534.3183.96455forward
CNT30706279Sorghum bicolorPrunus avium57.4149.7584.77302forward
CNT30557952Sorghum bicolorPanicum hallii79.6651.4193.56419forward

Expression of CNT30361348

Peptides detected in this lncRNA

>peptide 1 (39 aa)
AGGGCGAVEMGDWGSLCSWLSISWWQGQRSSHPKASPSS*

Sequence

>CNT30361348
GGGCGGGCGGCGGCTGCGGTGCGGTAGAGATGGGTGACTGGGGGAGCCTGTGTTCTTGGTTGTCCATTTCTTGGTGGCAGGGTCAAAGAAGTTCTCACCC
CAAAGCCTCTCCATCATCTTAGATTCATCAACTCCAAACTTAGATGCATACATCTTGGCAAAGTTAGTGAGGGTAAAGGCCCATCCGTGCAGACCAGCAG
AAAAAGCAACAGTCCCCTTCTCTGGGTACACTTGGACGTCACCAAGGAGCTTATCTTCGTATGTTGCCATGATGACATTGGCATTCTCAATGACACGGGA
GAAGGTCTGGTAAGCTTCCTCGCCCTCAACCTGAAGCTCAAGGAAGCACCTGTCCATCTTGTTCACGGTAAGAACTGGCCTAATCCTCTCACCAAGGGCT
TGGCGAAGCACAGTTTCAGTTTGCACACAGACACCTTCAATACAGTCAACCACCACAAGAGCACCATCGGTGATGCGAAGAGCAGCTGTGACTTCCGAAG
AAAAATCAACGTGCCCAGGCGAGTCA