Detailed information on CNT30361298


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30394048Sorghum bicolorTriticum turgidum38.5717.2986.67135forward
CNT30666056Sorghum bicolorTriticum dicoccoides36.8613.5884.5129forward
CNT30457028Sorghum bicolorSaccharum spontaneum2819.7284.6998forward
CNT30683236Sorghum bicolorTriticum urartu28.5724.5791100forward
CNT30100848Sorghum bicolorOryza rufipogon35.4332.886.29124forward

Expression of CNT30361298

Peptides detected in this lncRNA

>peptide 1 (84 aa)
FFFFFDCNNHFSYYIRGSNSIHRATRLHKNTLVVITHGVVHTTAYSCMYQLVPIAQMEMLLGMPLAVSPAAAPLWSEVLGYSSM*

>peptide 2 (32 aa)
FFFFFLIATITSVITYVVVIRFTGPHDYTKTH*

>peptide 3 (69 aa)
MHVPARTNRSDGDAVGNALGGEPSGGATVVRGVGVQQHVGELGGPVPVLELRVAVLAHPLLDGVPDRQPV

>peptide 4 (30 aa)
MASCTRLLIHACTSSYQSLRWRCCWECPWR*

Sequence

>CNT30361298
TTTTTTTTTTTTTTTTTGATTGCAACAATCACTTCAGTTATTACATACGTGGTAGTAATTCGATTCACCGGGCCACACGATTACACAAAAACACACTAGT
AGTTATTACACATGGCGTCGTGCACACGACTGCTTATTCATGCATGTACCAGCTCGTACCAATCGCTCAGATGGAGATGCTGTTGGGAATGCCCTTGGCG
GTGAGCCCAGCGGCGGCGCCACTGTGGTCAGAGGTGTTGGGGTACAGCAGCATGTAGGGGAACTCGGCGGGCCCGTTCCTGTTCTTGAGCTGCGGGTCGC
GGTACTCGCCCACCCACTGCTCGATGGCGTGCCAGATCGCCAGCCCGTCG