Detailed information on CNT30361296


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3085551Sorghum bicolorVigna radiata6.9623.2594.3453forward
CNT30131654Sorghum bicolorLolium perenne10.7827.8989.0282forward
CNT3057915Sorghum bicolorAmborella trichopoda6.9621.9996.2353reverse complement
CNT30557534Sorghum bicolorPanicum hallii16.4320.5982.4125forward

Expression of CNT30361296

Peptides detected in this lncRNA

>peptide 1 (31 aa)
SRTAGSRNPREARRTAAGSRNPRVSRTACAS*

>peptide 2 (81 aa)
MHKNMSMSPRGLLLVRMVVLDTLCTPCPQLALLTCPLTRNYSRTSIKSSSVVKEVITPVQAAQRHCVRLARKLFAGPFWPI*

>peptide 3 (43 aa)
LERPAAETLGKQGGRRPGAETLESLARPAHPKVDNGCCCGGHV*

>peptide 4 (93 aa)
MAAVVEVTFDAQKHVNVSKGSIVGEDGGIGYLVYPMPPAGTFDLSTDKELLKNINQELIGCKGGDNARAGSPKTLRKAREKAVRRAFLAYLGQ*

Sequence

>CNT30361296
CTCTCGAACGGCCGGCAGCAGAAACCCTAGGGAAGCAAGGAGGACGGCGGCCGGGAGCAGAAACCCTAGAGTCTCTCGCACGGCCTGCGCATCCTAAAGT
TGACAATGGCTGCTGTTGTGGAGGTCACGTTTGATGCACAAAAACATGTCAATGTCTCCAAGGGGTCTATTGTTGGTGAGGATGGTGGTATTGGATACCT
TGTGTACCCCATGCCCCCAGCTGGCACTTTTGACCTGTCCACTGACAAGGAATTACTCAAGAACATCAATCAAGAGCTCATCGGTTGTAAAGGAGGTGAT
AACGCCCGTGCAGGCAGCCCAAAGACACTGCGTAAGGCTCGCGAGAAAGCTGTTCGCAGGGCCTTTCTGGCCTATCTAGGGCAGTAAATGCATTTGAACA
TTGTCTCAACAAATCTGAGTATTATGTGAATAACACGTATGATATGTGCTGGAATAGCAGGGGTTTTACCCAGTGCGCCGGGTGAACAATTATGAACAAT
TCTGGAAGTGGTGAACAATTCTGGAAGTACTATTCAAATTGTACTTCTCTTCCTTTCAATTTGTTTCTGGCGCGGTAGTTCCTTTCAATTTGTTTCTGGC
GCGGCAGTGCATTGCTGGGGAAGATTCTTGGAAGTAACTATTTCCTAGATACTCATGCAGGGGACTTTGCGGTAAATCCCTAAACTAAAAAAGACCTAAA
GTTAAGGATTTATCAATAGGTAATGTTGCTCCAATACCAAAGAGCTACTACAGTACCAATT