Detailed information on CNT30361046


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41963|TIP12_ARATH, E-value = 3e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678518Sorghum bicolorSetaria viridis21.0326.5793.13131forward
CNT30522256Sorghum bicolorSetaria italica23.1130.7793.06144forward
CNT30549654Sorghum bicolorIpomoea triloba18.9432.7885.59118forward
CNT30712600Sorghum bicolorGlycine max32.7427.3582.84204forward
CNT30223741Sorghum bicolorHordeum vulgare17.0127.1887.74106forward
CNT30392788Sorghum bicolorTriticum turgidum21.3510.2290.23133forward
CNT30592382Sorghum bicolorMusa acuminata20.0621.0190.4125forward
CNT30247019Sorghum bicolorAvena sativa22.9511.6491.61143forward
CNT30662885Sorghum bicolorTriticum dicoccoides21.3558.3390.98133forward
CNT30136463Sorghum bicolorLolium perenne22.3118.9692.81139forward
CNT30721484Sorghum bicolorTriticum spelta21.3518.1990.23133forward
CNT30619906Sorghum bicolorCajanus cajan15.894593.9499forward
CNT30706772Sorghum bicolorPrunus avium1323.0886.4281forward
CNT3057335Sorghum bicolorAmborella trichopoda19.4234.7780.99121forward
CNT30322744Sorghum bicolorAsparagus officinalis15.8929.2987.8899forward
CNT30579749Sorghum bicolorEchinochloa crusgalli46.5547.3189.66290forward
CNT30113801Sorghum bicolorFicus carica18.7828.3385.47117forward

Expression of CNT30361046

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVGPHGDPADRHFHGPLTTTVCLELECGAKLSSILGV*

>peptide 2 (45 aa)
LGEYSGKCTNFTEANGSGIHGYRLVQESKRCDDRAAAGAAAAVAA*

>peptide 3 (42 aa)
SVNTQANAQILQKQTGPEFTVTDLSKKANDATIERRPAQQQQ*

>peptide 4 (67 aa)
MHKFYRSKRVRNSRLQTCPRKQTMRRSSGGRRSSSSSSLRCSTMHAHAREKLNGEGEIQRSRELMIC*

>peptide 5 (60 aa)
MFDDACTCTRETKRRGGDPEIERIDDLLAAHGTEPKLGGGPRNRVMLPPTNAPKVTAGFT*

>peptide 6 (72 aa)
MLAPTDTATNSAKACATAAAIRPEGAMPEPWPAKTKMRVEMNSANAALRAPGWYTSWWVPTAILLIGIFTAL*

Sequence

>CNT30361046
ACTCGGTGAATACTCAGGCAAATGCACAAATTTTACAGAAGCAAACGGGTCCGGAATTCACGGTTACAGACTTGTCCAAGAAAGCAAACGATGCGACGAT
CGAGCGGCGGCCGGCGCAGCAGCAGCAGTAGCAGCTTGAGATGTTCGACGATGCATGCACATGCACGAGAGAAACTAAACGGCGAGGGGGAGATCCAGAG
ATCGAGAGAATTGATGATCTGCTAGCTGCGCACGGAACGGAACCCAAGCTTGGTGGGGGGCCGCGGAACAGGGTGATGTTGCCGCCCACGAACGCGCCGA
AGGTCACGGCAGGGTTCACGTGACCGCCGGAGATGTTGGCGCCCACGGACACCGCCACGAACAGCGCGAAGGCGTGCGCCACAGCCGCCGCGATCAGGCC
CGAGGGGGCCATGCCGGAACCCTGGCCGGCGAAGACGAAGATGAGGGTGGAGATGAACTCAGCCAACGCCGCCTTGAGGGCGCCCGGGTGGTACACCTCA
TGGTGGGTCCCCACGGCGATCCTGCTGATCGGCATTTTCACGGCCCTCTAACCACGACTGTGTGCTTGGAGCTGGAGTGTGGAGCTAAGCTAAGCTCAAT
CTTAGGGGTGTGAGATGCGGTGG