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Detailed information on CNT30360998


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Lactuca sativaOryza sativa1009.2698.97290reverse complement
CNT30670953Lactuca sativaSetaria viridis10031.4298.97290reverse complement
CNT30550263Lactuca sativaIpomoea triloba1002.5198.97290forward
CNT30513690Lactuca sativaJuglans regia28.622.9186.7583forward
CNT30637323Lactuca sativaCapsicum annuum92.0718.9193.26267forward
CNT3098505Lactuca sativaSolanum tuberosum10029.5695.17290reverse complement
CNT30309155Lactuca sativaTriticum aestivum10013.0898.97290reverse complement
CNT30221574Lactuca sativaHordeum vulgare62.0715.698.33180reverse complement
CNT30400948Lactuca sativaTriticum turgidum10011.698.97290reverse complement
CNT30585815Lactuca sativaMusa acuminata99.3111.8795.14288forward
CNT30147387Lactuca sativaMedicago truncatula10043.4199.31290reverse complement
CNT30435015Lactuca sativaAegilops tauschii10025.7398.97290reverse complement
CNT30249262Lactuca sativaAvena sativa73.17.7392.92212reverse complement
CNT30662061Lactuca sativaTriticum dicoccoides10015.1198.62290reverse complement
CNT30314095Lactuca sativaCamelina sativa45.868.8796.24133reverse complement
CNT3081478Lactuca sativaBrassica juncea63.4515.8997.28184forward
CNT30139202Lactuca sativaLolium perenne10011.3698.62290reverse complement
CNT3018235Lactuca sativaZea mays84.4812.6598.37245forward
CNT30655385Lactuca sativaRosa chinensis10012.3198.62290forward
CNT30210912Lactuca sativaHelianthus annuus10013.6199.31290forward
CNT30369805Lactuca sativaOryza glumipatula97.2419.6797.52282forward
CNT30420891Lactuca sativaPapaver somniferum63.796.8997.3185reverse complement
CNT30319422Lactuca sativaAsparagus officinalis40.6914.4183.9118forward
CNT30575706Lactuca sativaOryza barthii97.2411.5797.16282forward
CNT30581589Lactuca sativaEchinochloa crusgalli10029.7198.97290reverse complement
CNT30116696Lactuca sativaOryza nivara1007.3198.97290reverse complement
CNT3040451Lactuca sativaMarchantia polymorpha33.116.3594.7996forward

Expression of CNT30360998

Peptides detected in this lncRNA

>peptide 1 (90 aa)
ERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGIGFARSIGPMITHDFCVPLVPQRLLVVLLAHTTVGSSTGVKS*

>peptide 2 (61 aa)
GANPERLPQFGLFSATREHEVGIASNRGSACRGEYVPGPCTHRPSHPGNRFRPKHRTNDHP*

Sequence

>CNT30360998
CGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGT
GAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATAGGTTTCGCCCGAAGCATCGGACCAATGATCACCCATGACTTCTGTGTACCA
CTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGGCGCATACCACGGTGGGGTCTTCGACTGGGGTGAAGTCGTAACAAGGTAGCCGTAGG