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Detailed information on CNT30360996


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTPRT002187, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524649Lactuca sativaSetaria italica73.4732.5294.311072forward
CNT3046714Lactuca sativaPrunus dulcis14.2697.6590.38208reverse complement
CNT30157615Lactuca sativaPistacia vera31.6762.9496.32462forward
CNT30185187Lactuca sativaSecale cereale73.0630.1494.931066forward
CNT30300122Lactuca sativaTriticum aestivum73.0649.4294.931066forward
CNT30221907Lactuca sativaHordeum vulgare64.2978.196.38938forward
CNT30394721Lactuca sativaTriticum turgidum72.9329.0595.021064forward
CNT30592527Lactuca sativaMusa acuminata12.9556.5998.41189forward
CNT30543268Lactuca sativaBrassica napus63.7440.5297.74930forward
CNT30511493Lactuca sativaSolanum lycopersicum20.7733.8999.34303reverse complement
CNT30147391Lactuca sativaMedicago truncatula71.8341.4297.91048reverse complement
CNT30435868Lactuca sativaAegilops tauschii58.1960.997.41849forward
CNT30258698Lactuca sativaAvena sativa28.5151.4997.84416reverse complement
CNT30670388Lactuca sativaTriticum dicoccoides73.0638.0294.841066forward
CNT3082633Lactuca sativaBrassica juncea21.5995.7496.51315forward
CNT30140120Lactuca sativaLolium perenne73.0632.195.121066forward
CNT3017954Lactuca sativaZea mays73.4128.2794.581071forward
CNT30689137Lactuca sativaTriticum urartu60.5273.496.49883forward
CNT30721631Lactuca sativaTriticum spelta66.3527.8796.8968forward
CNT30363124Lactuca sativaSorghum bicolor15.76101.3290.43230forward
CNT30595572Lactuca sativaOryza meridionalis18.6431.7495.96272forward
CNT30434643Lactuca sativaPapaver somniferum51.47100.9494.54751forward
CNT3057903Lactuca sativaAmborella trichopoda80.474992.931174reverse complement
CNT30108930Lactuca sativaOryza longistaminata59.5637.1497.58869forward
CNT30118490Lactuca sativaCitrus clementina6.3720.9994.6293forward
CNT3038420Lactuca sativaCucumis melo66.8368.2896.82975forward
CNT30603680Lactuca sativaOryza punctata73.0627.0195.031066forward
CNT30550626Lactuca sativaOryza brachyantha20.7103.0790.73302reverse complement
CNT30113381Lactuca sativaFicus carica30.71100.4595.98448reverse complement

Expression of CNT30360996

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MTTRRWAWKQPSFEESVIAHWSSSMAPKMYQGSSDSPKRRDLESSFFKCQ*

>peptide 2 (30 aa)
MMSMARGRALNGLGWPHFALPTPRKLRIQA*

>peptide 3 (45 aa)
MSNDKSCEKHDRLPVEGFLRSVNLRRVNRSLRNPRKGCRPMGTRK*

Sequence

>CNT30360996
GATTAGTTTAGTCAGGGGCGCTGTGAACTGTAATTGTGAAAAGGTTAGAAGATCTGGCCAAAGAAGGTGATAGCCCTGTAGATTCGTTCCCATGGTTCGA
TCCTTCCCAGTAAAACGCGGCGTGTTCGAATTCTGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCG
TACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCTATTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGCGAACAATCAGTCGAAGGAGCGGAGCTTA
GAGCCTTGACTTTCTATATTAGTCAAGCGCACTCACTCTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGGAAATGGGAACAGCGGCTTAAGCCATTA
GGTGTAGGCGCTTTCCAGAGGTGGAATCTTCTAGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGC
CTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAA
TCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACCCCAAGGAAACTCCGAA
TACAGGCCTAGATCGTTTGTACAGACAGACTTTTTGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATC
ACTTAGTGGAAAAGGAAGTGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAGCTCC
ATGGCACCGAAAATGTATCAGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGCAGCTTTTTCAAGTGTCAGTAGCGGAACGTTCTGTCAATCG
GGGAAGGTTTTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGATAAATCCTGTGAAAAACACGATCGCCTGCCAGTGGAA
GGTTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCT
TTGACTACAGAACCATGCCTGTCTGTTGGAGCGAACTGGATGATCGGGCCGAGAGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAATATGAACTTTG
AGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAAAAGGCGAAACTCTCGTCGTAGTTTGGTGACCTAAGGGGTG
GACACTTTTTGTTATCTAAAGTCGAAGACTCTGAAGTGGGCGAACACTCGGCCAAGCGG