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Detailed information on CNT30360933


BLAST search results

BLAST vs Swiss-Prot:
sp|Q32539|NU5C_LACSA, E-value = 3e-86

BLAST vs NONCODE:
NONATHT001114, E-value = 8e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201206Lactuca sativaPisum sativum5.2131.9987.38103forward
CNT30586565Lactuca sativaMusa acuminata5.7124.8487.61113forward
CNT30236419Lactuca sativaBrassica oleracea30.1830.5584.42597forward
CNT30342876Lactuca sativaEragrostis tef17.6998.3183.14350forward
CNT30336526Lactuca sativaCynara cardunculus16.5329.8193.88327forward

Expression of CNT30360933

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MNIFQLIPKKYKFVSNELVTNPNMEVLKTLI*

>peptide 2 (32 aa)
MIFKWQFQKNVLLYQKSVFVKIFGKGKDIGRR*

>peptide 3 (66 aa)
MSFTSNYNNDFQMAVPKKRTSISKKRIRKNIWKRKGYWAALKALSLGKSLSTGNSKSFFVRQTNKS*

Sequence

>CNT30360933
CCCGTTATCCAATAAAACCCTAAAATGCCTAATAATAAACCAAAATCGCCAACACGATTAGTTACAAACGCCTTTTGACAAGCCTTTGCTGCAACAGGTC
GTGTAAACCAAAATCCTATTAATAGATATGAACATATTCCAACTAATTCCCAAAAAATATAAATTTGTATCAAATGAACTAGTAACTAATCCCAACATGG
AAGTACTGAAAACACTCATATAAGCAAAAAATCTCAAATATCCGTGGTCATGAGACATATAATTATCACTATAAATAAGAACCATAATTCCAACAGTAGT
GATTAATATTAACATAATAGAAGTAAGCGGGTCGATCAAGTATCCGAATTCTAAAGAAAAATCATTATTGATAATCCAAGACCATACATATTGATAGACA
TAACTGCTATTTATTTGCTGAATAGACAGATTCATGGAAAAAATCATGACTATACTTAACAATAAAACACTCTGAAAAGACCACATACGACGAAGACTTT
TTGTTGCCGTCGGAAAAAGAAGAAGTCCCAACCCTATTAACATAGGAACTGGAAGTGGAAGGAAAGGTATTATCCACGCATATTGATATGTCTGTTCCAT
AAAAAAAGTTTTTTATTCTTAATTAATTGTTTCCGATTCACCGGATCTTACCTCGTTCGAAAAAAGTCAATAAAAAATCAAGATATGCACTAACTTATTT
AATAATTTTAAATAATTTTAGATTAGTATTTATTCTGAGTCTTTTCAGAATCGTTCAAATCAAATATTCAAAACAAGAAGTTACAATTGGTCAAATGAGA
TGACCAAGTTAGATATAAAAATGAATACTTATAACATGAAAATGCAAATCTAAATTATTATTACGAGAAATTCTCGTAATAATAATTTAGATTCATAGAG
CAAGGATAAAAAATTACGCTAAAAAGAGTACTTGATGCTGATATGAATTATAGGATTAACTAAGGTCATCGGTCTAATGAAATAAAAACTCTTGAGTTTA
GTTAGTTTCTTTCAACGCATTAACTAATTCATTATGGGATTGATTGTTTTCCATTTCAATCAAAACGATTTCTTAGTAAACGTTAGAATATTATAGATCT
AAAATGAACTTTTTTTATCGAGAAAGGGTAAAAAACGCCTGAGATATTTTTTTATCAAACCACGTATCCTTTAACAGATTTATTAGTAATCTGATTCGAA
TTTCAAAATTGAATTTAGGTGTATTCTTTTCTCGAGTTTGACTAAAAAAAGACTCAAGTTTTTTAGTAGGCAAAAGTTTACAATTGAGGTATTTTATTAG
TTGTAAATAAAGTCTAGAATGACGAAAATCAAGGTCTTTTAGGTTCTTTCTTTATTTTTATTAAATCATTAAGTTTCATTTCTATGACCTAGCAGATTCT
AAAGATATAAATTTGAGAGGAGAACTAAGAGTTCCAAACCAAAAATTTTTGGTTTGACAAATCTTGTATGGAATCAAAATTTTATTATTTCGAGTAATTT
TTGATCCAATTTAACGGATCTTTTACATATCTATATTTCTTTTTTATGAAGAGAATATTATTTATAGAAAAAATAGATAATGAATAAGAAATAATAATTT
GTTTTGAATAATAGATGTCTTTCACATCCAACTATAACAATGATTTTCAAATGGCAGTTCCAAAAAAACGTACTTCTATATCAAAAAAGCGTATTCGTAA
AAATATTTGGAAAAGGAAAGGATATTGGGCGGCGTTAAAAGCTTTGTCATTAGGGAAATCTCTTTCTACTGGGAATTCCAAAAGTTTTTTTGTGCGACAA
ACAAATAAGTCCTAAAATATTGGAATAATCGGAATGGATTTGACTCACAAATTTGGCTCAATACTTTTTGAATATGAAATTAACAATGGGCAGTCCCTAT
TCTAATCAATAAGAAATAGACCAGTACAAGATTTTTTATTTCTTTGTAGTATATTTTCACTAATATTTTTATGGTGGG