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Detailed information on CNT30360875


BLAST search results

BLAST vs Swiss-Prot:
sp|P27494|CB23_TOBAC, E-value = 2e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3070976Lactuca sativaQuercus suber29.1643.1183.11219forward
CNT30526271Lactuca sativaPhaseolus vulgaris24.3727.4883.61183forward
CNT30480204Lactuca sativaArabidopsis halleri23.348.3482.86175forward

Expression of CNT30360875

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MMIRSVHFNIVNLHFPCTRLEPVTFGTLDTARPKTF*

>peptide 2 (31 aa)
IWTKCDITESTLLLFVFSPSKSCITYNDIKQ*

>peptide 3 (74 aa)
MVKQILNRTLPCNNSLNKKPKHRKHRQSSIFKLLNLQFSKSFRVISQSKRVKRPTRINLIKAFTKRTPTNPVYLN

Sequence

>CNT30360875
ATTTGGACAAAATGTGACATAACTGAAAGTACATTGCTACTTTTTGTATTTAGCCCTTCCAAAAGTTGCATCACGTACAACGATATTAAGCAATAGGAAG
TACATGAGTGCTTTGTTTTTTTACATTCATCTAGCTTCTTGAAAGTAGTTCGTTATTGCAACACCGTGATGTTGCTTATAGTATTTTTGCAAAATAATAG
TTAGCTTGCAACGAAAAATCACTTATGATGATCCGGTCAGTACATTTCAATATCGTAAATCTACACTTTCCGTGCACACGACTAGAACCCGTCACCTTTG
GCACTCTTGACACCGCTAGGCCAAAGACATTTTGATGCAGTGTTGCTACAACATGAACCACTTCCATAACATAATCATAAAGATATTAACTCAAGAAAAT
AAGAAGATTAAGTGAAATAATTTCTTGATATTGCATAAGGGTTTAAATCTACACATATTTAACTCATTTTCCGGGCACAAAGTTGGTAGCATAAGCCCAA
GCATTGTTAGCAACCGGGTCAGCAAGATGGTCAAACAAATTCTCAATCGGACCCTTCCCTGTAACAATAGCCTGAACAAAAAACCCAAACATAGAAAACA
TCGCCAATCTTCCATTTTTAAGCTCCTTAACCTTCAATTCAGCAAAAGCTTCCGGGTCATCAGCCAATCCAAGCGGGTCAAAAGACCCACCCGGATAAAT
CTTATCAAGGCCTTCACCAAGCGGACCCCCACCAACCCGGTATACTTGAAT