Detailed information on CNT30360854


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7HKX6|PETG_CALFG, E-value = 1e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30200777Lactuca sativaPisum sativum31.8336.1181.66169forward
CNT30170457Lactuca sativaPistacia vera72.3230.2483.07384reverse complement
CNT3090025Lactuca sativaSolanum tuberosum88.5119.3184.47470reverse complement
CNT30235780Lactuca sativaBrassica oleracea28.4416.2289.4151forward
CNT3017135Lactuca sativaZea mays37.2942.0486.87198reverse complement
CNT30608460Lactuca sativaGossypium raimondii23.5445.2990.4125forward

Expression of CNT30360854

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL

>peptide 2 (34 aa)
VTFSLLVLSIMIDQSKPFNWYFFLSPILQKRKLR*

>peptide 3 (39 aa)
CDFLLVSAVYNDRSIKTFQLVFFFISYFAKKETQVSAFL*

>peptide 4 (31 aa)
MLTITSYFGFLLTALTITSALFIGLSKIRLI*

Sequence

>CNT30360854
TGTGACTTTCTCCTTGTTAGTGCTGTCTATAATGATAGATCAATCAAAACCTTTCAATTGGTATTTTTTTTTATCTCCTATTTTGCAAAAAAGGAAACTC
AGGTAAGTGCTTTTTTATAAACATATGTATAAAAAGAACATATTTCATTTAGCTCCTTCATGCTTACCATAACTAGTTATTTCGGTTTTCTACTGACGGC
TTTAACTATAACCTCAGCTCTATTTATTGGTCTGAGCAAGATACGACTGATTTGAAATTCATTGCACAATTCATAAAAGGAAATCTTTCCGCGAACTTCT
GTGTATTTATAGTTACTTACCGTGTCCATTGCCAATTCTTGGTCATTGAGATTCATGGTAATTCAGATTAATATTTAGGTATAGATATTACCTCTTTTTT
CTCCTTTCAAACAAATTGAAATGATTGAAGTTTTCCTATTTGGAATCGTGTTAGGTCTAATTCCTATTACTTTGGCTGGATTATTTGTAACTGCATATTT
ACAATACAGGCGTGGCGATCAGTTGGATCTT