Detailed information on CNT30360852


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 1e-95

BLAST vs NONCODE:
NONGMAT000219, E-value = 3e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618173Lactuca sativaSesamum indicum22.0415.2685.95121forward
CNT301078Lactuca sativaZea mays37.3474.8282.44205forward
CNT3041219Lactuca sativaChlamydomonas reinhardtii32.4231.2384.27178forward
CNT30100634Lactuca sativaOryza rufipogon39.7162.6481.65218forward

Expression of CNT30360852

Peptides detected in this lncRNA

>peptide 1 (41 aa)
RQQHSHPWEPRHLCTSNNMPCISHVWGRISPSWKKARKHCW*

>peptide 2 (44 aa)
MKWIRGYGTRFVWNSVTSTFRAPSKRREAVREEMTWETRRLRLV*

>peptide 3 (58 aa)
MASLSRRMATSVCSRREWGAETGAGTTSDRVEDEEALETGAVVGELSDAVETEVDDFFS

>peptide 4 (51 aa)
ATAAFTSLGTTSPLYIKQHAMYFPCLGSHFAIMEEGSKALLVISATESCSW*

>peptide 5 (45 aa)
DSSIHILGNHVTSVHQTTCHVFPMSGVAFRHHGRRLESTVGDFRD*

Sequence

>CNT30360852
GCGACAGCAGCATTCACATCCTTGGGAACCACGTCACCTCTGTACATCAAACAACATGCCATGTATTTCCCATGTCTGGGGTCGCATTTCGCCATCATGG
AAGAAGGCTCGAAAGCACTGTTGGTGATTTCCGCGACTGAGAGTTGCTCATGGTAAGCTTTTTCAGCTGAAATCACAGGTGCGTAAGAAGAAAGCATGAA
GTGGATACGTGGATATGGGACGAGATTTGTTTGGAATTCAGTCACGTCGACGTTCAGAGCACCGTCGAAGCGGAGGGAGGCGGTGAGGGAAGAGATGACT
TGGGAGACGAGACGGTTGAGGTTGGTGTAGGTCGGGCGTTCGATGTCTAGTGACCGGCGGCAGATGTCGTAGATGGCTTCGTTGTCGAGGAGAATGGCGA
CGTCGGTGTGTTCGAGGAGAGAGTGGGGAGCCGAGACCGGAGCCGGTACCACCTCCGACCGCGTTGAAGACGAGGAAGCCTTGGAGACCGGTGCAGTTGT
CGGCGAGCTTTCGGATGCGGTCGAGACAGAGGTCGACGATTTCTTTTCC