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Detailed information on CNT30360807


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 1e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500595Lactuca sativaCoffea canephora25.8114.5982.88111forward
CNT30282946Lactuca sativaChenopodium quinoa28.8412.1983.06124forward
CNT30401900Lactuca sativaBeta vulgaris28.8412.6881.45124forward
CNT30526451Lactuca sativaPhaseolus vulgaris31.1612.6485.82134forward
CNT30144767Lactuca sativaMedicago truncatula24.8816.0982.24107forward
CNT30620949Lactuca sativaCajanus cajan54.1921.6582.4233forward

Expression of CNT30360807

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MARRACLISASCRMAFFSGSAAKFNGSNGPPGYNLFSGSSSAFL*

>peptide 2 (70 aa)
CQKLQTLQDRRNHKTTSVMIYIYQRKLQKTILREEAKGVKDSSVKWITQMSNPVVERTFSGIPPWQDGHA*

Sequence

>CNT30360807
TTGTCAAAAGTTACAAACTTTACAAGATAGACGTAATCATAAAACTACATCGGTGATGATATATATTTATCAACGGAAACTCCAAAAAACGATTTTACGA
GAAGAAGCCAAAGGTGTCAAGGATAGTAGTGTGAAGTGGATCACTCAAATGAGTAACCCAGTTGTTGAGAGGACCTTTTCCGGAATCCCACCATGGCAAG
ACGGGCATGCTTGATCTCCGCCAGTTGTAGGATGGCTTTCTTCTCGGGGTCGGCGGCTAAGTTCAACGGATCAAACGGACCACCGGGGTATAACCTCTTT
TCAGGATCAAGCTCAGCGTTTCTTTGAAACTCAATGTAGCCGATGATCAAAACCTCAATCCAGATCAAAGTGGTGATAGAGAATGGGAGTGGTTGACCAA
GGTACGATGATCCATCGATTAGTTCAACCT