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Detailed information on CNT30360669


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H1E4|RAP24_ARATH, E-value = 1e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30488421Lactuca sativaOlea europaea7.3220.586.6790forward
CNT30708948Lactuca sativaGlycine max15.2234.2580.21187forward
CNT30563605Lactuca sativaActinidia chinensis22.8659.4181.85281forward

Expression of CNT30360669

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MYPTKAGSGSWVNGSLRPIFPSAFVSHLCKASWVSEPSNCCR*

>peptide 2 (38 aa)
PLASGRSLAAWRRRRSEAACSRRTRHRCEFRYDAGEES*

>peptide 3 (74 aa)
MDLRWSQLVQSERGNGLVITKRILGRESVGVPIWVKSRFLLGRRRRRRRRRRERRRRVGVRSRRRRESKGTIVI*

>peptide 4 (43 aa)
MTQVRKVKPRVVTTQLVSCNIVSQSGFLSCIKCTQPKPGPVLG*

>peptide 5 (38 aa)
MESAGSIRKRKRIGHNQTDLGSRIRGCTHLGKIQILVG*

>peptide 6 (34 aa)
MSSPVDCWKSLTFQNSIVAEAILNFFFLIFESIN*

Sequence

>CNT30360669
CTCCGCTAGCGTCTGGCAGATCGCTTGCAGCTTGGCGTCGACGGAGGAGTGAAGCGGCTTGTAGTCGCCGAACTCGCCACCGATGTGAGTTCCGTTATGA
CGCAGGTGAGGAAAGTTAAGCCTCGCGTAGTCACCACGCAGCTTGTAAGCTGCAATATCGTAAGCCAGAGCGGCTTCCTCAGCTGCATCAAATGTACCCA
ACCAAAGCCGGGTCCGGTTCTTGGGTAAACGGATCTCTGCGACCCATTTTCCCCAGTGCCTTTGTCTCACACCTCTGTAAAGCTTCGTGGGTTTCGGAGC
CAAGTAATTGTTGTAGGTAGGTAAGTTGATCTGGGTTTGGATCTGATGGATCTGAGATGGAGTCAGCTGGTTCAATCCGAAAGAGGAAACGGATTGGTCA
TAACCAAACGGATCTTGGGTCGAGAATCCGTGGGTGTACCCATCTGGGTAAAATCCAGATTCTTGTTGGGTAGGAGAAGAAGAAGAAGAAGGAGAAGAAG
AGAAAGACGAAGAAGGGTAGGGGTAAGAAGTAGAAGGAGAAGAGAAAGCAAGGGTACTATCGTAATTTGACTTGAAGAAAGGCCCAAGTGCATCCATGAG
CTCACCGGTTGACTGCTGGAAATCATTAACATTCCAAAACTCCATTGTAGCAGAAGCCATTCTTAATTTTTTTTTTTTAATTTTTGAATCAATTAATTGA
AGAAAAATAAATTCAAGATTTTCCCACGAAAAAAACCAGGAAAATCAAGGGTTTTCAAATAATAATTAAACCCTTTTTTCTTCGAAATACTTAATAAAAT
CTAAAATAAAACCAACCTCAAGGGACTAAAATAAACCCTAAAAAGGTATGATTTTGATGTGAAAAAAAAAAAATCAAGATTTACAGAAAATTAGAAATAG
AACCCAAATGAAAAAAGCTGGATCTCTATTCTGAAAAACACCTGACTCTCTGACTCGTAGAAAATAGAATTTAAATCAAGTTTGTTTTTTGCTCAAAAAA
TCGTTGAAAAGATTAAACAAAAACAAACCCAAATCAATATTATTTTTTCAGTTTTGAAAGACAGATGATTTGCAGAAAGGGATGAACAGAAGCGGGGAGT
TACAGAAGGGGGGGAATTGTAATTAAAATTGAAGAACTCAAAACAAGAAAGTGAAGAAATCTTGAAAGTGTGATTGAGTGTGTGTATGTGTGAGAAAAGA
AGACTCTCAGCCTCACCTTTTGTGTTTTT