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Detailed information on CNT30360575


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 5e-98

BLAST vs NONCODE:
NONTPRT002505, E-value = 3e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Lactuca sativaSetaria italica35.1628.2783.02212forward
CNT30316147Lactuca sativaCorylus avellana61.6949.9384.14372forward
CNT30703138Lactuca sativaQuercus lobata52.460.3186.08316forward
CNT30277485Lactuca sativaChenopodium quinoa59.0441.7481.74356forward
CNT30729539Lactuca sativaCorchorus capsularis54.7349.1182.42330forward
CNT3068683Lactuca sativaQuercus suber52.5764.4385.49317forward
CNT30524728Lactuca sativaPhaseolus vulgaris52.0758.1581.21314forward
CNT30486152Lactuca sativaOlea europaea60.5340.3383.01365forward
CNT30506399Lactuca sativaNicotiana attenuata50.4191.8484.21304forward
CNT30177095Lactuca sativaSecale cereale32.8414.2981.31198forward
CNT30223417Lactuca sativaHordeum vulgare35.1693.3983.49212forward
CNT3084565Lactuca sativaVigna radiata56.5520.1880.35341forward
CNT30457070Lactuca sativaSaccharum spontaneum44.1139.0681.58266forward
CNT3066796Lactuca sativaLeersia perrieri37.6558.3580.62227forward
CNT30718631Lactuca sativaMalus domestica golden54.7357.4982.42330forward
CNT30343308Lactuca sativaEragrostis tef35.1677.3782.08212forward
CNT30570592Lactuca sativaVitis vinifera37.8170.5985.96228forward
CNT30645151Lactuca sativaCannabis sativa51.5832.6382.96311forward
CNT30105598Lactuca sativaOryza longistaminata41.1335.9979.44248forward
CNT30574680Lactuca sativaOryza barthii41.1327.0779.84248forward
CNT30580197Lactuca sativaEchinochloa crusgalli44.6132.6581.41269forward
CNT30499107Lactuca sativaDigitaria exilis35.6654.9982.33215forward
CNT30115589Lactuca sativaOryza nivara41.1317.3879.84248forward
CNT30603529Lactuca sativaOryza punctata40.1331.6380.17242forward
CNT3064271Lactuca sativaSelaginella moellendorffii32.6735.8281.73197forward

Expression of CNT30360575

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MMHHVLFISSEEIINDYDTVSSFNQSVNEMTSDESCTAGHHNP*

>peptide 2 (50 aa)
QPTLMNSPVSNPRIPPGKKREKLTDWIDVAPVGFHLRVLQRISVHLTGAR*

Sequence

>CNT30360575
TTCAACCAACATTGATGAACAGTCCCGTAAGTAATCCACGAATTCCCCCGGGAAAAAAGAGAGAAAAACTCACCGATTGGATTGACGTTGCCCCAGTAGG
TTTCCACTTGAGGGTGTTGCAGAGGATCTCCGTACACCTCACTGGTGCTCGTTAGCAAGAACCGTGCACCAACTCTCTTCGCCAGTCCAAGCATATTCAA
TGTCCCCACTACATTCGATATGATTGTTTTCACGGGGTTGTATTTGTAATGAACAGGGGAAGCAGGGCAAGCAAGGTGATAGATCTGGTCGACTTCCAGT
AGTAACGGCTCTACGACGTCGTGTCGGATGAGCTCAAACCTAGGGTTTCCAAAATGATGCATCACGTTCTCTTTATTTCCAGTGAAGAAATTATCAACGA
CTATGACACTGTCTCCTCGTTCAATCAATCGGTCAACGAGATGACTTCCGACGAATCCTGCACCGCCGGTCACCACAATCCTTAACCCCTTCCGTTTCAA
ACCCAAAGGGATCTTCCCACCTGAATTAAACCGATAAGCTGGTCTTCCAGGGTTCATTAACTGAGCCGATCCGGAAACTGCGTAGGAGGTGTAGGCGGAG
ATG