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Detailed information on CNT30360555


BLAST search results

BLAST vs Swiss-Prot:
sp|Q332S2|NU1C_LACSA, E-value = 0.0

BLAST vs NONCODE:
NONMEST004538, E-value = 6e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694441Lactuca sativaOryza sativa10.7843.5482.2118reverse complement
CNT30671235Lactuca sativaSetaria viridis10.3229.2792.92113forward
CNT30531354Lactuca sativaEucalyptus grandis99.914189.761094forward
CNT30317759Lactuca sativaCorylus avellana99.9153.6589.761094forward
CNT30518402Lactuca sativaJuglans regia22.7465.0191.97249forward
CNT30615574Lactuca sativaSesamum indicum96.7171.1292.451059forward
CNT3020678Lactuca sativaCitrullus lanatus11.3232.1291.13124forward
CNT30406240Lactuca sativaBeta vulgaris23.6510093.05259forward
CNT30201817Lactuca sativaPisum sativum55.898.8788.87611forward
CNT30712407Lactuca sativaGlycine max10088.3185.021095forward
CNT30569544Lactuca sativaActinidia chinensis99.9129.6192.61094forward
CNT30237694Lactuca sativaBrassica oleracea61.6461.6489.33675forward
CNT30262672Lactuca sativaBrassica rapa53.068.1288.81581forward
CNT30608772Lactuca sativaGossypium raimondii28.4999.3691.99312forward
CNT30215974Lactuca sativaHelianthus annuus57.3585.7994.59628forward
CNT30689544Lactuca sativaTriticum urartu46.858.2184.21513forward
CNT30596717Lactuca sativaOryza meridionalis67.7679.7884.37742forward
CNT30151942Lactuca sativaPrunus persica10046.6688.681095forward
CNT3057989Lactuca sativaAmborella trichopoda47.6799.4387.36522forward
CNT3035415Lactuca sativaCucumis melo60.1898.6589.68659forward
CNT30148081Lactuca sativaBrachypodium distachyon78.7285.0985.15862forward
CNT30116024Lactuca sativaOryza nivara38.2693.5388.78419forward
CNT30723989Lactuca sativaLupinus angustifolius36.6228.7787.28401forward

Expression of CNT30360555

Peptides detected in this lncRNA

>peptide 1 (38 aa)
NRLPREIGKRNFHPRFNNWSILSLGKVHLVAIGMNKNK*

>peptide 2 (56 aa)
MKKLVDLNMKQRKINQILYRNIRFDNLLLILLLLLVNQRVIVHTRLGKKLEKLESL*

>peptide 3 (85 aa)
MDITAIDGPILNKRVSPLDGRRFSLKSNLVPSARAWRIPKGPAYSGPIRCCIPADISLSNQTITSTPIVIPNTRVKIGISIHMIP*

Sequence

>CNT30360555
ATAATAGATTACCTAGAGAAATAGGTAAAAGAAATTTCCATCCAAGATTTAATAATTGGTCCATTCTCAGTCTCGGTAAAGTCCATCTTGTTGCGATAGG
AATGAACAAGAACAAATAAGTTTTAGCTAATGTAATAAAGATACCAATTATTGTTCCAAAGACTCTACCCCTTTTAGTAATTTCAAAAACCTCGGGAACA
AATATGTACGGAATAGAAAGATTCCAACCCCCCAAGTAAAGAACTGTTACAAATAATGAAGAAACTAGTAGATTTAAATATGAAGCAACGTAAAATAAAC
CAAATTTTATACCGGAATATTCGGTTTGATAACCTGCTACTAATTCTTCTTCTGCTTCTGGTAAATCAAAGGGTAATCGTTCACACTCGGCTAGGGAAGA
AATTAGAAAAACTAGAAAGCCTATAGGTTGACGCCACAAATTCCATCCCCAAAAACCATATTTTGACTGCGCTTCAACTATATCAACTGTACTTGAACTG
TTAGATAATCATAATATTGATAACACACATAGAGTTAATGGTATTTCGTAACTAATTGATTGAGCAGCAGCTCGTAGACCACCTAAAAAAGAATATTTAT
TATTTGAGCCATATCCTGACATAAGAAGGCCGACAGGAGCAATGCTTGAAATAGCAATCCATAAAAAAACACCGATACTGAGATCGGCTAGAACAAGGTG
ATAACTAAAAGGAATTACTAAATAACTTAATAAAATGGATATAACTGCTATAGATGGTCCAATACTGAATAAACGAGTATCTCCTCTAGATGGAAGAAGA
TTCTCTTTGAAAAGTAATTTGGTACCATCTGCTAGAGCTTGGAGAATTCCCAAAGGTCCTGCGTATTCAGGACCAATACGTTGTTGTATACCCGCAGATA
TTTCTCTTTCTAACCAAACAATTACTAGTACACCTATTGTGATTCCTAATACAAGAGTAAAAATAGGAATAAGCATCCATATGATCCCATAGACCTCTTT
TAAGGATTCCAATATAGAAAAAGAATTGATAGCTTGTACTTCTGTTGTATCAATTATCATTTTAACGATCAACTTCTCCCATAATGATATCTATA