Detailed information on CNT30360489


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 2e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281593Lactuca sativaChenopodium quinoa11.3322.6582.11123forward
CNT30382112Lactuca sativaManihot esculenta18.638.3381.19202forward
CNT30478099Lactuca sativaArabidopsis halleri14.2721.9280.65155forward

Expression of CNT30360489

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MYVRTFPASCHVTPVTDSTVRAPRVANIAHRPWMSSHSLNL*

>peptide 2 (42 aa)
MDEFALPKPLKPEHFAVWLERCRFHIRIFEPGSDHVSGQILR*

>peptide 3 (72 aa)
MVGKVSISHPHLRTGFRSRLRPNSSLSFDPTSPNQTVNTLPLECRSGRRVPMKEAAAAADAAVAIGGGGGGL*

>peptide 4 (82 aa)
PCEVTIKSNILFRLICQKLQTLQDRRNHKTTSVMIYIYQRKLQKTILREEAKGVKDSSVKWITQMSNPVVERTFSGSSSAFL*

Sequence

>CNT30360489
CCATGCGAAGTGACAATAAAAAGCAATATATTGTTCCGCTTGATTTGTCAAAAGTTACAAACTTTACAAGATAGACGTAATCATAAAACTACATCGGTGA
TGATATATATTTATCAACGGAAACTCCAAAAAACGATTTTACGAGAAGAAGCCAAAGGTGTCAAGGATAGTAGTGTGAAGTGGATCACTCAAATGAGTAA
CCCAGTTGTTGAGAGGACCTTTTCCGGATCAAGCTCAGCGTTTCTTTGAAACTCAATGTAGCCGATGATCAAAACCTCAATCCAGATCAAAGTGGTGATA
GAGAATGGGAGTGGTTGACCAAGGTACGATGATCCATCGATTAGTTCAACCTAAAGAAAAACAATACAAGAAAATCCATTAATTTTCATGGTTTATGCTT
AATCATCGACTAATCAAATCTATAACATGTACGTACGCACCTTTCCGGCATCTTGCCATGTAACACCGGTGACGGATTCAACGGTGAGAGCGCCGAGGGT
AGCCAACATAGCCCACCGGCCATGGATGAGTTCGCACTCCCTAAACCTCTGAAGCCCGAACACTTCGCTGTATGGTTGGAAAGGTGTCGATTTCACATCC
GCATCTTCGAACCGGGTTCCGATCACGTCTCCGGCCAAATTCTTCGCTAAGTTTTGATCCAACGAGTCCAAATCAAACTGTAAATACTCTGCCGTTGGAA
TGTAGGTCCGGGAGACGGGTTCCGATGAAGGAGGCGGCGGCGGCGGCAGATGCGGCGGTTGCCATCGGTGGTGGTGGTGGTGGGTTGTGACTTGTGTGTA
GTGGGCAAGAAGTGTGGCGTGATGTATAGAGTTTGATGGGTGTGAAGGGATTAGATAAGCGAGGAAATTTTGGCCGTTGGATGAAGCGAGTATCCATCTG
AGGGATGAGAGAACGTAGGCCTTATCTAGGCCTTATCTGGTTGAAGAATGTCTGATTTCTACTGGTGGATTGAGGAGGAGTACGTGTCATGGTAATTTGT
GGTTGATATTTGCCAAATTAAACCATTAATAATAAGAACTTGAAAGATTTAAAAGCTAGCCAAAACATTTTCAAGGAGAAGGTGGC