« Back to Lactuca sativa search


Detailed information on CNT30360397


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M591|CRD1_ARATH, E-value = 4e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522654Lactuca sativaSetaria italica27.3631.3981.42113forward
CNT30363833Lactuca sativaSorghum bicolor30.9914.581.25128forward
CNT30620290Lactuca sativaCajanus cajan31.7243.8181.68131forward
CNT30497686Lactuca sativaDigitaria exilis30.9935.9681.25128forward
CNT30557967Lactuca sativaPanicum hallii30.9925.5580.47128forward

Expression of CNT30360397

Peptides detected in this lncRNA

>peptide 1 (74 aa)
STKLLVKKKPRELSSTRPLQELNEDLPHRTLNFISSFFEFLISNEMCLVVIRFEFLQQRFEFCFVQVLVHLGVE*

Sequence

>CNT30360397
GTCGACCAAGCTCCTTGTAAAGAAGAAACCCAGAGAACTCAGCAGTACAAGACCTCTCCAAGAACTCAACGAAGATCTGCCTCATAGGACCTTGAATTTC
ATCAGCAGCTTCTTTGAATTCCTTATTTCTAACGAAATGTGTCTGGTTGTAATCCGTTTTGAATTCCTGCAACAACGCTTCGAATTCTGCTTCGTTCAAG
TTCTTGTTCATCTCGGTGTTGAATAGTTGCTCCATCTCGTCGAAATCAGTCGTGTAGAAGCGTGGCGCCAGCAGGGTTTCCTTGATTCCCTTCTTGTTTT
TTCCACCGCCGGTTCCTTTTGTGGTGGTGGGGGTGATGGTGGTGCTGCCGCAGTATCCGATTTTGGAGATGGGTTTGAGCAATGCCATCTCTGCTGCCAT
TGTTGGTTGTGGA