Detailed information on CNT30360309


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7FNT3|PSBA_ATRBE, E-value = 1e-83

BLAST vs NONCODE:
NONCQUT000002, E-value = 1e-146

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378687Lactuca sativaArabidopsis thaliana66.2635.4793.44381forward
CNT3021612Lactuca sativaCitrullus lanatus16.747.2997.9296forward
CNT3095573Lactuca sativaSolanum tuberosum15.4822.0392.1389forward
CNT30391503Lactuca sativaTriticum turgidum60.3569.487.03347forward
CNT30598581Lactuca sativaFraxinus excelsior48.3578.7597.48278forward
CNT30655381Lactuca sativaRosa chinensis55.1359.2597.79317forward
CNT30627896Lactuca sativaDaucus carota96.3537.7697.11554forward
CNT30102095Lactuca sativaOryza rufipogon22.9656.4192.42132forward
CNT30117629Lactuca sativaOryza nivara14.6122.489.2984forward

Expression of CNT30360309

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MSGYDIISFFFLTESVTFISRFIFCGFPDQTRGIPSEKLP*

>peptide 2 (42 aa)
MSITFMHNFHTKVSTVNDISPSINYTALTINYRLVESHSADT*

Sequence

>CNT30360309
CAATAAGACCAAAGTCTTATCCATTTGTAGATGGAGCTTCGATAGCAGCTAAGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACC
AAGGTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGGCCTTGACTATCAACTACCGATTGGTTGAAAGCCATAGTGCTGATACCTAAAGCA
GTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAAC
CATGAGCGGCTACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGC
ATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCA
TACCCAGACGGAAACTAAGCTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAAATAATA